RNA id: TU285974


Basic Information

Item Value
RNA id TU285974
length 227
lncRNA type intronic
GC content 0.52
exon number 1
gene id G250766
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 35382185 ~ 35382411 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctaacatggtccaaacacaccaagacagttgtgaagagggcacgacaaaacctattccccctcaggagactgaagagagttggcatgggtcctcagatactcaaaaggttctacagctgcaccatcgagagcattatgactggttgcatcactgcttggtatggcaactgctcggcctccgaccgcaaggcactacagagggtagtgcgtacggcccagtacatcac

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU285960 lncRNA downstream 17284 35357516 ~ 35364901 (-) True G250752
TU285919 lncRNA downstream 80724 35301217 ~ 35301461 (-) True G250711
TU285915 lncRNA downstream 84672 35297224 ~ 35297513 (-) True G250707
TU285914 lncRNA downstream 86247 35295722 ~ 35295938 (-) True G250706
TU285900 lncRNA downstream 108152 35273716 ~ 35274033 (-) True G250692
TU285975 lncRNA upstream 87 35382498 ~ 35382771 (-) True G250767
TU285978 lncRNA upstream 2794 35385205 ~ 35385471 (-) True G250770
TU285979 lncRNA upstream 3242 35385653 ~ 35386633 (-) True G250771
TU286042 lncRNA upstream 98606 35481017 ~ 35481293 (-) True G250833
TU286064 lncRNA upstream 131536 35513947 ~ 35514151 (-) True G250855
XM_021596617.1 mRNA downstream 179242 35176253 ~ 35202943 (-) False si:dkey-34d22.1
XM_021596651.2 mRNA upstream 720432 36102843 ~ 36109189 (-) False LOC110519653
XM_036973959.1 mRNA upstream 729776 36112187 ~ 36116920 (-) False stmn1b
XM_036973958.1 mRNA upstream 729776 36112187 ~ 36117544 (-) True stmn1b
LOC110519907 mRNA upstream 1053970 36436381 ~ 36437754 (-) True LOC110519907
XM_036964824.1 mRNA upstream 1104464 36486875 ~ 36505339 (-) True LOC110504056
TU285142 other downstream 485889 34895958 ~ 34896296 (-) True G249990
TU285130 other downstream 492231 34889506 ~ 34889954 (-) True G249978
TU284611 other downstream 1022734 34357275 ~ 34359451 (-) True G249485
TU283202 other downstream 1962478 33419429 ~ 33419707 (-) True G248239
TU280776 other downstream 3800983 31562545 ~ 31581202 (-) False LOC110518371
TU286719 other upstream 757701 36140112 ~ 36144572 (-) True G251462
TU286962 other upstream 975072 36357483 ~ 36357971 (-) True G251681
TU287636 other upstream 1349434 36731845 ~ 36733440 (-) True gpatch3
TU291417 other upstream 4016850 39399261 ~ 39508702 (-) True LOC110519955
TU291595 other upstream 4262160 39644571 ~ 39645743 (-) True G255911

Expression Profile