RNA id: TU285979


Basic Information

Item Value
RNA id TU285979
length 981
lncRNA type intronic
GC content 0.43
exon number 1
gene id G250771
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 35385653 ~ 35386633 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acccattgccttgatgactgctttgcacacaaTTGGCATTGTTCCCACGTTCACAGAGACTGCTGTTCACGTGAAAGCTGCATATATCAActcaattggaaattacctttacatttcaaaTCACGCTACACGCTACAGCACCGACCTTCGGCACTATGGATTGAATTGAGCCCTTGTGAACCTTGAGCTTCCGTGCACATAAACTATATGAGTGGGAGATGACCAACTCGCAAGTTGGTGCTGTAGAAGCAAGCAGTAAATTGCGGGGCAGTCAGCCAAAACAACGGTCAACAAGTTAAGGAGAGACACGTAGCAGGAGCATTCGTATACCAACTTATCAGCGTGGACGAGCGTGAAGCTTTGACTGGGTTTATTAGCGTGTGATTCTGATTCTACTAACACAATAAGAGATTATAACACTGCTgaacacttaaccagtatggtaccacagcattctgcagttatacgccatcccatctggtttagtTGGACTATCATGTGTTTTTCAACAAGGCAACCCAACacccctccaggctgtgtaagggctattttaccaagaaggagagtgatggagtgctgcatcagatgacctggcctccacaatcacctgacctcaaccaaattgagaaggtttgggatgagtcggaccgcagagtgaaggaaaagcagccaattagtgctcaacatatgtgggaactccttcaagactgttggaaaagcattccatgtgaaactggttgagagaataccaagtgtgcaaagctgtcatcaaggcaaatggtggctactttgaagaatctaaaatctgtttcggtttactacatgattccatatgtgttatttaatagttctgatgtcttcactattattctacatgtagaaaagcgtaaaaacaaagaaaaaccattgaatgagtgggtgtgtccaaacttttgactggtattgtacatcacagaagactgaaatataacaaaactgttt

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU285978 lncRNA downstream 182 35385205 ~ 35385471 (-) True G250770
TU285975 lncRNA downstream 2882 35382498 ~ 35382771 (-) True G250767
TU285974 lncRNA downstream 3242 35382185 ~ 35382411 (-) True G250766
TU285960 lncRNA downstream 20752 35357516 ~ 35364901 (-) True G250752
TU285919 lncRNA downstream 84192 35301217 ~ 35301461 (-) True G250711
TU286042 lncRNA upstream 94384 35481017 ~ 35481293 (-) True G250833
TU286064 lncRNA upstream 127314 35513947 ~ 35514151 (-) True G250855
TU286077 lncRNA upstream 144467 35531100 ~ 35531422 (-) True G250868
TU286088 lncRNA upstream 159753 35546386 ~ 35546619 (-) True G250879
TU286093 lncRNA upstream 166784 35553417 ~ 35553715 (-) True G250884
XM_021596617.1 mRNA downstream 182710 35176253 ~ 35202943 (-) False si:dkey-34d22.1
XM_021596651.2 mRNA upstream 716210 36102843 ~ 36109189 (-) False LOC110519653
XM_036973959.1 mRNA upstream 725554 36112187 ~ 36116920 (-) False stmn1b
XM_036973958.1 mRNA upstream 725554 36112187 ~ 36117544 (-) True stmn1b
LOC110519907 mRNA upstream 1049748 36436381 ~ 36437754 (-) True LOC110519907
XM_036964824.1 mRNA upstream 1100242 36486875 ~ 36505339 (-) True LOC110504056
TU285142 other downstream 489357 34895958 ~ 34896296 (-) True G249990
TU285130 other downstream 495699 34889506 ~ 34889954 (-) True G249978
TU284611 other downstream 1026202 34357275 ~ 34359451 (-) True G249485
TU283202 other downstream 1965946 33419429 ~ 33419707 (-) True G248239
TU280776 other downstream 3804451 31562545 ~ 31581202 (-) False LOC110518371
TU286719 other upstream 753479 36140112 ~ 36144572 (-) True G251462
TU286962 other upstream 970850 36357483 ~ 36357971 (-) True G251681
TU287636 other upstream 1345212 36731845 ~ 36733440 (-) True gpatch3
TU291417 other upstream 4012628 39399261 ~ 39508702 (-) True LOC110519955
TU291595 other upstream 4257938 39644571 ~ 39645743 (-) True G255911

Expression Profile