RNA id: TU286101


Basic Information

Item Value
RNA id TU286101
length 363
lncRNA type intronic
GC content 0.41
exon number 1
gene id G250892
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 35563480 ~ 35563842 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acttgagacaactgtggcattgtggtgtgtgacaaaactgcacattttagagtggccttttattgtccccagcacatggtacacctgtgtaatgatcatgctgtttaatcagattcttgatatgccacacctgtcaggtggatggattatcttggcaaaggagaaatgctcactaatagggatgtaaacaaatttttgCACAACATTCGAGAGAAATAAGCTTGTTTTGCcataatttatttcagctcatgtcaacatgggaccaacactaaggaaatcagtcaatggaaatacgtaaattaggccctagtctatggatttgtcacaccctgatctgtttcacctgtctttgtgctcgtctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286093 lncRNA downstream 9765 35553417 ~ 35553715 (-) True G250884
TU286088 lncRNA downstream 16861 35546386 ~ 35546619 (-) True G250879
TU286077 lncRNA downstream 32058 35531100 ~ 35531422 (-) True G250868
TU286064 lncRNA downstream 49329 35513947 ~ 35514151 (-) True G250855
TU286042 lncRNA downstream 82187 35481017 ~ 35481293 (-) True G250833
TU286103 lncRNA upstream 2063 35565905 ~ 35566168 (-) True G250894
TU286105 lncRNA upstream 5907 35569749 ~ 35569966 (-) True G250896
TU286111 lncRNA upstream 16772 35580614 ~ 35580856 (-) True G250902
TU286115 lncRNA upstream 21418 35585260 ~ 35585506 (-) True G250906
TU286120 lncRNA upstream 27121 35590963 ~ 35591268 (-) True G250911
XM_021596617.1 mRNA downstream 360537 35176253 ~ 35202943 (-) False si:dkey-34d22.1
XM_021596651.2 mRNA upstream 539001 36102843 ~ 36109189 (-) False LOC110519653
XM_036973959.1 mRNA upstream 548345 36112187 ~ 36116920 (-) False stmn1b
XM_036973958.1 mRNA upstream 548345 36112187 ~ 36117544 (-) True stmn1b
LOC110519907 mRNA upstream 872539 36436381 ~ 36437754 (-) True LOC110519907
XM_036964824.1 mRNA upstream 923033 36486875 ~ 36505339 (-) True LOC110504056
TU285142 other downstream 667184 34895958 ~ 34896296 (-) True G249990
TU285130 other downstream 673526 34889506 ~ 34889954 (-) True G249978
TU284611 other downstream 1204029 34357275 ~ 34359451 (-) True G249485
TU283202 other downstream 2143773 33419429 ~ 33419707 (-) True G248239
TU280776 other downstream 3982278 31562545 ~ 31581202 (-) False LOC110518371
TU286719 other upstream 576270 36140112 ~ 36144572 (-) True G251462
TU286962 other upstream 793641 36357483 ~ 36357971 (-) True G251681
TU287636 other upstream 1168003 36731845 ~ 36733440 (-) True gpatch3
TU291417 other upstream 3835419 39399261 ~ 39508702 (-) True LOC110519955
TU291595 other upstream 4080729 39644571 ~ 39645743 (-) True G255911

Expression Profile