RNA id: TU286178


Basic Information

Item Value
RNA id TU286178
length 380
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G250964
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 35669508 ~ 35669887 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCAGATGACATCCTCCTCTATGTAACAGAACCCCAGGCTAGTATCCCAGCTATTCTTGATGTGATCAATTTGTTTGGTACCTTCTCGGGATACAGAATAAATTGGAACAAGAGTGAATTAATGCCCATACGGTCGCAAAATACCTCCTGGCTAGAACATCTCCCATTTAAGTTATCTTCAGAAAAATTTACCTACCTAGGAATTGTAGTTACCAAACAATACTCCTTACTATTTAAAGAGAATTTCCCCTCTCTGATACAAAAACTCAAAGCAAACATACTATTTTGGAgaactctcccaatttctctgctcggaagaattaatgccattaaaatggtcttcctcccacaactgctctacctatatcagaacatcccag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286120 lncRNA downstream 78240 35590963 ~ 35591268 (-) True G250911
TU286115 lncRNA downstream 84002 35585260 ~ 35585506 (-) True G250906
TU286111 lncRNA downstream 88652 35580614 ~ 35580856 (-) True G250902
TU286105 lncRNA downstream 99542 35569749 ~ 35569966 (-) True G250896
TU286103 lncRNA downstream 103340 35565905 ~ 35566168 (-) True G250894
TU286186 lncRNA upstream 2387 35672274 ~ 35676936 (-) True G250969
TU286264 lncRNA upstream 53302 35723189 ~ 35724202 (-) True G251042
TU286266 lncRNA upstream 57928 35727815 ~ 35742651 (-) True G251044
TU286272 lncRNA upstream 75052 35744939 ~ 35802618 (-) False G251048
TU286271 lncRNA upstream 77028 35746915 ~ 35802618 (-) True G251048
XM_021596617.1 mRNA downstream 466565 35176253 ~ 35202943 (-) False si:dkey-34d22.1
XM_021596651.2 mRNA upstream 432956 36102843 ~ 36109189 (-) False LOC110519653
XM_036973959.1 mRNA upstream 442300 36112187 ~ 36116920 (-) False stmn1b
XM_036973958.1 mRNA upstream 442300 36112187 ~ 36117544 (-) True stmn1b
LOC110519907 mRNA upstream 766494 36436381 ~ 36437754 (-) True LOC110519907
XM_036964824.1 mRNA upstream 816988 36486875 ~ 36505339 (-) True LOC110504056
TU285142 other downstream 773212 34895958 ~ 34896296 (-) True G249990
TU285130 other downstream 779554 34889506 ~ 34889954 (-) True G249978
TU284611 other downstream 1310057 34357275 ~ 34359451 (-) True G249485
TU283202 other downstream 2249801 33419429 ~ 33419707 (-) True G248239
TU280776 other downstream 4088306 31562545 ~ 31581202 (-) False LOC110518371
TU286719 other upstream 470225 36140112 ~ 36144572 (-) True G251462
TU286962 other upstream 687596 36357483 ~ 36357971 (-) True G251681
TU287636 other upstream 1061958 36731845 ~ 36733440 (-) True gpatch3
TU291417 other upstream 3729374 39399261 ~ 39508702 (-) True LOC110519955
TU291595 other upstream 3974684 39644571 ~ 39645743 (-) True G255911

Expression Profile