RNA id: TU286281


Basic Information

Item Value
RNA id TU286281
length 647
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G251057
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 35816638 ~ 35817284 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagtaaaacagggttttttgatctcacagattacagtgtcatctctccccataggaatacatagcctgcaccacaaaattcaacctgaagcctatatgggttatgaatgccgtatgaacctgtcttcggtaccagtccatcaggacactatgaggtctacctgtgttgattctaagcttcctggaccaaccggaagtggttaaaatgcccctaaaagtgtttacccataccctgcctgcagtttgatagacatggtgcattcaaccctgtgtagatcagtcaattcttaacgtaaagacttaaaactcaggattctgtaagtggccatgtcaatcaagacatgtgttgatttatagcttcctgtgccaaccggaagtgccataattggtgtctcaggggctgtttcgaagggttaaaaaagtcagatctgtccaaaacttcatatatgtgattaggcaacccccatgaactgtaaatcagtcatttttcccaaaaaaattaaaaggaaaaaaaaatcacactaaaacacaacttggaaggagggacgtattggggtgcgtagagacagacagtggctgcaatagttagctttgttggagctaaaaaagaaccgtcggacctagagttccgaaactttagaaacctgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286272 lncRNA downstream 14020 35744939 ~ 35802618 (-) False G251048
TU286271 lncRNA downstream 14020 35746915 ~ 35802618 (-) True G251048
TU286266 lncRNA downstream 73987 35727815 ~ 35742651 (-) True G251044
TU286264 lncRNA downstream 92436 35723189 ~ 35724202 (-) True G251042
TU286186 lncRNA downstream 139702 35672274 ~ 35676936 (-) True G250969
TU286283 lncRNA upstream 2216 35819500 ~ 35819713 (-) True G251059
TU286297 lncRNA upstream 6448 35823732 ~ 35877946 (-) False G251068
TU286296 lncRNA upstream 11654 35828938 ~ 35877946 (-) True G251068
TU286300 lncRNA upstream 24625 35841909 ~ 35844275 (-) True G251070
TU286304 lncRNA upstream 65437 35882721 ~ 35883100 (-) True G251073
XM_021596617.1 mRNA downstream 613695 35176253 ~ 35202943 (-) False si:dkey-34d22.1
XM_021596651.2 mRNA upstream 285559 36102843 ~ 36109189 (-) False LOC110519653
XM_036973959.1 mRNA upstream 294903 36112187 ~ 36116920 (-) False stmn1b
XM_036973958.1 mRNA upstream 294903 36112187 ~ 36117544 (-) True stmn1b
LOC110519907 mRNA upstream 619097 36436381 ~ 36437754 (-) True LOC110519907
XM_036964824.1 mRNA upstream 669591 36486875 ~ 36505339 (-) True LOC110504056
TU285142 other downstream 920342 34895958 ~ 34896296 (-) True G249990
TU285130 other downstream 926684 34889506 ~ 34889954 (-) True G249978
TU284611 other downstream 1457187 34357275 ~ 34359451 (-) True G249485
TU283202 other downstream 2396931 33419429 ~ 33419707 (-) True G248239
TU280776 other downstream 4235436 31562545 ~ 31581202 (-) False LOC110518371
TU286719 other upstream 322828 36140112 ~ 36144572 (-) True G251462
TU286962 other upstream 540199 36357483 ~ 36357971 (-) True G251681
TU287636 other upstream 914561 36731845 ~ 36733440 (-) True gpatch3
TU291417 other upstream 3581977 39399261 ~ 39508702 (-) True LOC110519955
TU291595 other upstream 3827287 39644571 ~ 39645743 (-) True G255911

Expression Profile