RNA id: TU286300


Basic Information

Item Value
RNA id TU286300
length 382
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G251070
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 35841909 ~ 35844275 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgacatctaattgactgatggacactgacttgctagttgacttttgtacatttgcaatatgtttaaacagagagggaccatcaccaaaatggcattctgaaatcaacaaaaaaatggcatcaccatagtctccagactgtgctgagtataacgagctatcccgcttgaccgtagctcgctcggtctaggcgcagcgaccattagaatagtaggcccaaaatgaagcctgcaccacaatgtcatttgcttttgggtgacagtgagagaaccgttagggtgagaagaaaaattccaccacaggaatgttcctaaggtcctcccgatctgaacaagcctaaccttgaccgtgtggcattaacccttcacagtaaaacagggttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286283 lncRNA downstream 22196 35819500 ~ 35819713 (-) True G251059
TU286281 lncRNA downstream 24625 35816638 ~ 35817284 (-) True G251057
TU286272 lncRNA downstream 39291 35744939 ~ 35802618 (-) False G251048
TU286271 lncRNA downstream 39291 35746915 ~ 35802618 (-) True G251048
TU286266 lncRNA downstream 99258 35727815 ~ 35742651 (-) True G251044
TU286304 lncRNA upstream 38446 35882721 ~ 35883100 (-) True G251073
TU286305 lncRNA upstream 40122 35884397 ~ 35885085 (-) True G251074
TU286306 lncRNA upstream 41715 35885990 ~ 35886211 (-) True G251075
TU286638 lncRNA upstream 99011 35943286 ~ 36004007 (-) True G251384
TU286747 lncRNA upstream 261453 36105728 ~ 36109194 (-) True LOC110519653
XM_021596617.1 mRNA downstream 638966 35176253 ~ 35202943 (-) False si:dkey-34d22.1
XM_021596651.2 mRNA upstream 258568 36102843 ~ 36109189 (-) False LOC110519653
XM_036973959.1 mRNA upstream 267912 36112187 ~ 36116920 (-) False stmn1b
XM_036973958.1 mRNA upstream 267912 36112187 ~ 36117544 (-) True stmn1b
LOC110519907 mRNA upstream 592106 36436381 ~ 36437754 (-) True LOC110519907
XM_036964824.1 mRNA upstream 642600 36486875 ~ 36505339 (-) True LOC110504056
TU285142 other downstream 945613 34895958 ~ 34896296 (-) True G249990
TU285130 other downstream 951955 34889506 ~ 34889954 (-) True G249978
TU284611 other downstream 1482458 34357275 ~ 34359451 (-) True G249485
TU283202 other downstream 2422202 33419429 ~ 33419707 (-) True G248239
TU280776 other downstream 4260707 31562545 ~ 31581202 (-) False LOC110518371
TU286719 other upstream 295837 36140112 ~ 36144572 (-) True G251462
TU286962 other upstream 513208 36357483 ~ 36357971 (-) True G251681
TU287636 other upstream 887570 36731845 ~ 36733440 (-) True gpatch3
TU291417 other upstream 3554986 39399261 ~ 39508702 (-) True LOC110519955
TU291595 other upstream 3800296 39644571 ~ 39645743 (-) True G255911

Expression Profile