RNA id: TU286305


Basic Information

Item Value
RNA id TU286305
length 689
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G251074
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 35884397 ~ 35885085 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagcgaccattagaatagtaggcccaaaatgaagcctgcaccacaatgtcatttgcttttgggtgacagtgagagaaccgttagggtgagaagaaaaattccaccacaggaatgttcctaaggtcctcccgatctgaacaagcctaaccttgaccatgtggcattaacccttcacagtaaaacagggttttttgatctcacagattacagtgtcatctctccccataggaatacattgcctgcaccacaaaattcaacctgaagcctatatgggttatgaatgccgtatgaacctgtcttcggtaccagtccatcaggccactatgaggtctacctgtgttgattctaagcttcctgaaccaaccggaagtggttaaaatgcccctaaaagtgtttacccagaccctgcctgcagtttgatagacatggtgcattcaaccctgtgtagatcagtcaattcttaacgtaaagacttaaaactcaggattctgtaagtggccatgtcaatcaagacatgtgttgatttatagcttcctgtgccaaccggaagtgccataattggtgtctcaggggctgtttcgaagggttaaaaaagtcagatctgtccaaaacttcatatatgtgattaggcaacccccatgaactgtaaatcagtcatttttccaaaaaaaattcaaaggaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286304 lncRNA downstream 1297 35882721 ~ 35883100 (-) True G251073
TU286297 lncRNA downstream 6451 35823732 ~ 35877946 (-) False G251068
TU286296 lncRNA downstream 6451 35828938 ~ 35877946 (-) True G251068
TU286300 lncRNA downstream 40122 35841909 ~ 35844275 (-) True G251070
TU286283 lncRNA downstream 64684 35819500 ~ 35819713 (-) True G251059
TU286306 lncRNA upstream 905 35885990 ~ 35886211 (-) True G251075
TU286638 lncRNA upstream 58201 35943286 ~ 36004007 (-) True G251384
TU286747 lncRNA upstream 220643 36105728 ~ 36109194 (-) True LOC110519653
TU286756 lncRNA upstream 234590 36119675 ~ 36119874 (-) True G251498
TU286757 lncRNA upstream 237395 36122480 ~ 36122800 (-) True G251499
XM_021596617.1 mRNA downstream 681454 35176253 ~ 35202943 (-) False si:dkey-34d22.1
XM_021596651.2 mRNA upstream 217758 36102843 ~ 36109189 (-) False LOC110519653
XM_036973959.1 mRNA upstream 227102 36112187 ~ 36116920 (-) False stmn1b
XM_036973958.1 mRNA upstream 227102 36112187 ~ 36117544 (-) True stmn1b
LOC110519907 mRNA upstream 551296 36436381 ~ 36437754 (-) True LOC110519907
XM_036964824.1 mRNA upstream 601790 36486875 ~ 36505339 (-) True LOC110504056
TU285142 other downstream 988101 34895958 ~ 34896296 (-) True G249990
TU285130 other downstream 994443 34889506 ~ 34889954 (-) True G249978
TU284611 other downstream 1524946 34357275 ~ 34359451 (-) True G249485
TU283202 other downstream 2464690 33419429 ~ 33419707 (-) True G248239
TU280776 other downstream 4303195 31562545 ~ 31581202 (-) False LOC110518371
TU286719 other upstream 255027 36140112 ~ 36144572 (-) True G251462
TU286962 other upstream 472398 36357483 ~ 36357971 (-) True G251681
TU287636 other upstream 846760 36731845 ~ 36733440 (-) True gpatch3
TU291417 other upstream 3514176 39399261 ~ 39508702 (-) True LOC110519955
TU291595 other upstream 3759486 39644571 ~ 39645743 (-) True G255911

Expression Profile