RNA id: TU286962


Basic Information

Item Value
RNA id TU286962
length 489
RNA type TUCP
GC content 0.57
exon number 1
gene id G251681
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 36357325 ~ 36357971 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgaatgtgtgtgtgtgcattgatgCAAGCTGCACCTGGTCTCCTCTGGCATCTCATAAGCTAATTCTGCCATCCTGTGATTAAACAGGCAGCTGTGGTCCCTACTACTACAATCACCACAACTAGTACTACTACTCACCCAACATGGCAGCATTAACGCCCCTGTTGACGGGCTtgggcagggggaggggaggctGCTTGGTCGCCTGGTGGGTGGAGGATGGAGCGAAGGACACTACTGCTGAAGATTGGGGGTTGGCGCCTGCAGAGGAGACAGTTCGGGCAGGCATTGCAACtgcagaggaagaagaggaggaagagtacgTGGTTGCAGGGTGGTTGGATGGGGTGTGGGATGAGGGTAACCCTTCGCTGCCGGGCTCGGGGGTGGAGCTCAGCCACTTGGGGGGCATAACGGACTGTTTGGGGGACAGAGACTCTCGGAGAGTGTCCCGCAGCAAATCTGGGTCAGGAACAAAATGGCTCTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286964 lncRNA downstream 2254 36354752 ~ 36355229 (-) True G251682
TU286953 lncRNA downstream 9849 36347435 ~ 36347634 (-) True G251673
TU286941 lncRNA downstream 20765 36336416 ~ 36336718 (-) True G251661
TU286935 lncRNA downstream 27400 36329875 ~ 36330083 (-) True G251655
TU286932 lncRNA downstream 30184 36327080 ~ 36327299 (-) True G251652
TU286966 lncRNA upstream 2803 36360774 ~ 36361389 (-) False G251683
TU286967 lncRNA upstream 2912 36360883 ~ 36361389 (-) True G251683
TU286971 lncRNA upstream 6369 36364340 ~ 36364610 (-) True G251687
TU286980 lncRNA upstream 13834 36371805 ~ 36372213 (-) True G251696
TU287471 lncRNA upstream 30362 36388333 ~ 36388985 (-) True G252124
XM_036973958.1 mRNA downstream 239939 36112187 ~ 36117544 (-) True stmn1b
XM_036973959.1 mRNA downstream 240563 36112187 ~ 36116920 (-) False stmn1b
XM_021596651.2 mRNA downstream 248294 36102843 ~ 36109189 (-) False LOC110519653
XM_036973939.1 mRNA downstream 1154540 35183012 ~ 35202943 (-) False si:dkey-34d22.1
LOC110519907 mRNA upstream 78410 36436381 ~ 36437754 (-) True LOC110519907
XM_036964824.1 mRNA upstream 128904 36486875 ~ 36505339 (-) True LOC110504056
XM_021596781.2 mRNA upstream 186199 36544170 ~ 36568553 (-) True tent5ba
XM_021596793.2 mRNA upstream 253844 36611815 ~ 36628902 (-) False zdhhc18a
XM_021596801.2 mRNA upstream 253844 36611815 ~ 36628903 (-) False zdhhc18a
TU286719 other downstream 212911 36140112 ~ 36144572 (-) True G251462
TU285142 other downstream 1461187 34895958 ~ 34896296 (-) True G249990
TU285130 other downstream 1467529 34889506 ~ 34889954 (-) True G249978
TU284611 other downstream 1998032 34357275 ~ 34359451 (-) True G249485
TU283202 other downstream 2937776 33419429 ~ 33419707 (-) True G248239
TU287636 other upstream 373874 36731845 ~ 36733440 (-) True gpatch3
TU291417 other upstream 3041290 39399261 ~ 39508702 (-) True LOC110519955
TU291595 other upstream 3286600 39644571 ~ 39645743 (-) True G255911
TU291727 other upstream 3460677 39818648 ~ 39818980 (-) True G256016
TU292346 other upstream 3964535 40322506 ~ 40322898 (-) True G256616

Expression Profile