RNA id: TU287009


Basic Information

Item Value
RNA id TU287009
length 3217
lncRNA type inter_gene
GC content 0.34
exon number 3
gene id G251720
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 36408279 ~ 36433127 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agaatatcaaaacattctattgaaactattctttcaaattggtttatactccccatctcactgtcaactccatCGTAGAGCCAAGGATCAAGAAATTAGACCTATACCCCTCgggaatagaacaaaacaaacacaacaatacaatacactcaacaatacaatacactcattcacatatcacTTAAGTTGTATAACTTCAATTCAAACCCTCAAAAAACTGAATCCTCCCCCATGTTTTACACACATCTCTCCGTATGAgagtaatgtaaaacaaaatttcagctaacctaatcaaattaaaatcactaaACTGAAGAAAAACTacacaaagaaaaattatttaacccctatggtcataggaaaatagacttaaagcttagttaaaagCAATGCCCTCTTCACACTGGTCCAAATTACAAATAAGGATTAAGAAACATATTTACCAATTACACAAATTATTTTGAAAGCAGTATTACAAATGACCATACATTTATTttccaaatggctttccaatgcgggtgatcaagccacaacggaaagtcatcagaaggtcataggtcatacaaaACCCTCCAAAGCAGTGTTTTGCACTATATAAAACAATCCCAATGTGGTGAGTTCCCCCTTCAATGTGGTAGTTTATGGCCCCAATTTCACTCACTCTCCCCAAGAGTATATTCCCTGGACACATtccagagagacagtgaaatatcAATTTTCCCGAAGAAAACACAAAAACACTTACACTACATTGATTCAGAAACTCAAACGTGAACTATAAACCAAACCTAATGATAATTCCACTGtacctcaaatcattaatcatacgttttaatcaaatcaatgtaTATGCATGATAAGTTAAATCAACTCCTAAAAAAAACCTCTTAATCAGCAACCTAATAATTTCAATCTGTTGATATAAATTTAGTAAAAACCAATCctgattttttaaaacaaatctaaaatccTTCAAAAGTCGGTGCTGTCTCatcatctaaaaatacaaataaacatattttttccCCAACTGATATCCACAAAGGTCAATACTGTTCAGCACATCCATTAATGATCTTCCTTTAGTCTGTACAGGGTCTGAAGTtccaatgtatgcagatgatacagtgataaattcatgcaaataacaaactacacaagaactcactactataATGATTCAGATGACAAAATAGCTAAGAGACTCATGTTTACatctcaataaaataaaacagtcTGCATGTTCCTCAAAAAACAAGTACTGATGGAAAAAGCTcctggtggtatctgattttaagtgccaaggcatcatacttgattccaacctttcTTTTAAAAAGCAAATAATAAAGGAACTCAAATACCAAATTCAACCTCGCTAATTCCCAAAACATATGAAATCGTTTTGACTACACTATATAACTACTATAACAACACTATAAttaaaatctatgatactcccccacttaacatactagtTTAGTCTTTGGCCCAATCTTGCTTTTCAACATTCATACCCATTCAGTCTTCTGTCAACAGGTTCTCATACCATTCAATCCAGCAATCACCTTTAATGACCTGACATTgttccacataatggaaacaTACCATAACCTTAGAGTACATGAACTTTCCTGCTCAAATTAACTGGTGTTACTTAAACAATCAAACCAAGAATCAATAACCATCAGAAGCTATCCTTACGATGTTTTATGATTCCGACATCCAGTCTCCCAATTCTCATAGCCTAATACAGTAAATATAAACGCCACAAATCTATGATGCCCACCTAGCGAATCAGCTGCTAGAAATACAGACAAAAATGTACCTGAACAACGGTTAAAACAATTTGAGTAAGGTTATTGTATATTCAAACTAATAACGCAAATGTACGTTATTCTACAACAATCTACCTGCCTCCAGAAACTTTCCCTGACAATGAGCAGCCAACATAACAACTCACTCTCTTACATACTTTCAACTCAACTTTCCTATTTCTTTTTCCCCCAGTTGGGCAAAAATATAACCCCTCTCATTTCAACGTTTTTCCCTTACCTCTATCGTAAGATTAAAACCTCAACTTTataacttcctcttctctttgctctccacacttatgaaatgtatcatatttctttaaaaataacacacacagcgCAAAAATTATAACATGCGTCAGTCAATCTATAAGAATGAAAAACATTTCGGTAACCACTTTCCTATCGCCATTCTCTCCCCGCTATCATTCAGAGTGTCTTTAACTTAGGTAACTGTCTTCTCTATTGATACAGTAATTTAAATACGACCCAAttctcaatacattattccagCAGATAATTTAGTGAACAGACATCGTCTTGCATCAGAATTTGCTTCGTTATTATTTTAAATTGAATTAGCCTatcaatttaacctaaacaatcTATTGAAAACGTTCAATTTATCTCTTATACAAACACTAGCGACCATAACTTTCCATgcaaaacatacaaatagatTATTTACAATCAGAAACTCTAAATTGAGCCAGCGCCGTGACTGGAAATGGAACTCGGGCCTCCCGCgttgcaggcgagaattctaccactgaaccacTAATGCTATTGCCAATAACCAAAATTCTCCGGATATAAACCCCATTTACAAAGTAAAATCAAAACACGACACTATCGGTAATTCCCAGAAGAATAATAGCCCGATTTTAATAGTACAAACATTGCTCCAGCTATGATTCTCAAATTCCAAATGAATATATTAGCAATCAAAGAATAAAATCGACACTAATGACTAGGAAACAGTAAAAGTAGATTATGTTTACTTATGCaacgtatttcaattactttactaCATCACTTTAATCACGCAATGATAATTAGCTTGATGGAAAACCTTAGGCTTTGTACAACATTATAAATTACATCGAGCATCCCTCGAATTCTATTTAACTTTATGGAAAACAGTTTATTCAATAAATCCCGCAATTtctctcatactgggaagaaaAAATATAACATGTTCAGACCTTAAGGGCAGTTTGATTTCAAATGTTTCACCCAGACGGAGATAATCCAATATGCGTTTTATAGTTACATCGTTAGGGTAAGATAATCAAAAGTGGACACACTCTAAATCAGTTTCTAGAGCTCAATTTCCCAGATTTTGTAGATTATTTTAATAGTGCTTAAAAACttcatctttatcaaattatccatttaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286994 lncRNA upstream 14215 36393848 ~ 36394064 (+) True G251708
TU286978 lncRNA upstream 36989 36371090 ~ 36371290 (+) True G251694
TU286581 lncRNA upstream 72699 36335370 ~ 36335580 (+) True G251334
TU286576 lncRNA upstream 78240 36329721 ~ 36330039 (+) True G251329
TU286572 lncRNA upstream 82259 36325735 ~ 36326020 (+) True G251325
TU287039 lncRNA downstream 33881 36467008 ~ 36469679 (+) True G251748
TU287064 lncRNA downstream 78447 36511574 ~ 36579307 (+) False G251773
TU287121 lncRNA downstream 151395 36584522 ~ 36584736 (+) True G251826
TU287128 lncRNA downstream 160511 36593638 ~ 36593848 (+) True G251832
TU287131 lncRNA downstream 163539 36596666 ~ 36596872 (+) True G251835
XM_021596759.2 mRNA upstream 21063 36381470 ~ 36387216 (+) False rcc1
XM_021596753.2 mRNA upstream 21063 36381471 ~ 36387216 (+) False rcc1
XM_021596757.2 mRNA upstream 21063 36381471 ~ 36387216 (+) True rcc1
XM_036973967.1 mRNA upstream 39963 36351326 ~ 36368316 (+) False phactr4b
XR_005044177.1 mRNA downstream 224340 36657467 ~ 36659553 (+) True LOC110519932
XM_021596823.2 mRNA downstream 985979 37419106 ~ 37424336 (+) True LOC110519936
XR_002472909.2 mRNA downstream 1052456 37485583 ~ 37489562 (+) False LOC110519939
XR_002472908.2 mRNA downstream 1053955 37487082 ~ 37489570 (+) False LOC110519939
XM_021596827.2 mRNA downstream 1255661 37688788 ~ 37691898 (+) True si:ch211-184m13.4
TU285526 other upstream 1186907 35219832 ~ 35221372 (+) True LOC110519579
TU285376 other upstream 1234816 35153702 ~ 35173463 (+) True rab42b
TU284433 other upstream 1987667 34419890 ~ 34420612 (+) True G249323
TU284354 other upstream 2105372 34302572 ~ 34302907 (+) True G249245
TU283840 other upstream 2395222 34006158 ~ 34013057 (+) True G248795
TU287065 other downstream 78447 36511574 ~ 36525173 (+) True G251773
TU287145 other downstream 190483 36623610 ~ 36627542 (+) True G251845
TU288722 other downstream 1293821 37726948 ~ 37727338 (+) True G253299
TU289268 other downstream 1659195 38092322 ~ 38092734 (+) True G253834
TU289648 other downstream 2008039 38441166 ~ 38441734 (+) True G254204

Expression Profile