RNA id: TU287601


Basic Information

Item Value
RNA id TU287601
length 258
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G252248
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 36581391 ~ 36581648 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttttattcttGTTTTTTACTTTAGTCTAcatggtaaatattttcttaacacttattGAACTGCACTGCTGGTTAAGgacttaagtaagcatttcacagtggttagagcgttggactagtaaccggaaggttgcaagttcaaacccccgagctgacaaggtacaaatctgtcgttctgcccctgaacaggcagttaacccactgttcctaggccgtcattgaaaataagaatttgttcttaactgacttgcctagtta

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU287482 lncRNA downstream 180651 36399833 ~ 36400740 (-) True G252135
TU287474 lncRNA downstream 187776 36393348 ~ 36393615 (-) True G252127
TU287472 lncRNA downstream 191429 36389498 ~ 36389962 (-) True G252125
TU287471 lncRNA downstream 192406 36388333 ~ 36388985 (-) True G252124
TU286980 lncRNA downstream 209178 36371805 ~ 36372213 (-) True G251696
TU287604 lncRNA upstream 1793 36583441 ~ 36583657 (-) True G252251
TU287608 lncRNA upstream 3590 36585238 ~ 36585472 (-) True G252255
TU287613 lncRNA upstream 9992 36591640 ~ 36592079 (-) True G252260
TU287483 lncRNA upstream 22615 36604263 ~ 36605654 (-) True G252136
TU287590 lncRNA upstream 77028 36658676 ~ 36659052 (-) True G252237
XM_021596781.2 mRNA downstream 12838 36544170 ~ 36568553 (-) True tent5ba
XM_036964824.1 mRNA downstream 76052 36486875 ~ 36505339 (-) True LOC110504056
LOC110519907 mRNA downstream 143637 36436381 ~ 36437754 (-) True LOC110519907
XM_036973958.1 mRNA downstream 463847 36112187 ~ 36117544 (-) True stmn1b
XM_036973959.1 mRNA downstream 464471 36112187 ~ 36116920 (-) False stmn1b
XM_021596793.2 mRNA upstream 30167 36611815 ~ 36628902 (-) False zdhhc18a
XM_021596801.2 mRNA upstream 30167 36611815 ~ 36628903 (-) False zdhhc18a
XM_021596803.2 mRNA upstream 30167 36611815 ~ 36628907 (-) False zdhhc18a
XM_036973981.1 mRNA upstream 30167 36611815 ~ 36629028 (-) False zdhhc18a
XM_036973980.1 mRNA upstream 30167 36611815 ~ 36629130 (-) True zdhhc18a
TU286962 other downstream 223420 36357483 ~ 36357971 (-) True G251681
TU286719 other downstream 436819 36140112 ~ 36144572 (-) True G251462
TU285142 other downstream 1685095 34895958 ~ 34896296 (-) True G249990
TU285130 other downstream 1691437 34889506 ~ 34889954 (-) True G249978
TU284611 other downstream 2221940 34357275 ~ 34359451 (-) True G249485
TU287636 other upstream 150197 36731845 ~ 36733440 (-) True gpatch3
TU291417 other upstream 2817613 39399261 ~ 39508702 (-) True LOC110519955
TU291595 other upstream 3062923 39644571 ~ 39645743 (-) True G255911
TU291727 other upstream 3237000 39818648 ~ 39818980 (-) True G256016
TU292346 other upstream 3740858 40322506 ~ 40322898 (-) True G256616

Expression Profile