RNA id: TCONS_00030272


Basic Information

Item Value
RNA id TCONS_00030272
length 888
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id XLOC_014857
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 28922544 ~ 29030799 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAAGACATCATGTCGAGATCTGACCACACTACGAGTCTCTCTGCAGTAGTCAATATCATGTTAAAGAAAGATAAGGACGTCTATCTGCTGGACTCCATTGTGAATGAACAGCGTATCAAGTTATCGCAACCTGCAGAGATTCAGATATCATCTCATACGGCTCAGGAGTTCATCACTTCAAGAACAAAGTATACAGCATTGGTCAGTCAGAACCTTGACACAATCTGCTGGCTGACTTCACTTCACTCCACTCCACATCTGACCTCACTTGAGACATACCAGATGAAGACGACTGGCTGCTCTCCCTCTTCCCTTTTATGTCAAAGCTTTTGAGTCCGGTATGTGAAACTTTCTTTCTGAGAACAATCTACTTGACCTCTATTAATCAGACTGAAACCTGGCCACTCCATTTGAAGTGCTTACTTTAGCCAGATTGGCCTTACTTAGGTTCACGGTGGTTTTCTATTTGCTGTTGGAAAGTTATTGAGTTTCCAAATTGAGGTAGTAGTTTTTGGATATGTACTGTTACTTAATTAAAGCTTGTTTACTTTATCATATCAGGTCATGAGAAGGACACATTCTCATTCCACACCCATCATAGTAGCAGTATACAACAGATCTAAGAACTGGGTCTTTTTCCATTGTGCTATGCATGAGCTCAAGAGTGTTGTGCATTCTAAAATGAAGAtaactaatatattattataatttgtagaTGAAGTAAAGACTTTAGCAACTTTTATTGCCTTGTTTTTctcaatacaatttttttaaataaattaaattatcacAGTATCttgtttcatatcattcaatattgataattactgaatatttttaacaatccatttgGAAACATtaggattttctttttaaaaccactttat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030269 lncRNA downstream 120993 28817621 ~ 28824390 (-) False XLOC_014856
TCONS_00030274 lncRNA upstream 76418 29022836 ~ 29030799 (-) True XLOC_014857
TCONS_00030275 lncRNA upstream 156989 29103407 ~ 29110806 (-) False XLOC_014858
TCONS_00030276 lncRNA upstream 156989 29103407 ~ 29110894 (-) False XLOC_014858
TCONS_00030277 lncRNA upstream 156989 29103407 ~ 29122225 (-) True XLOC_014858
TCONS_00030278 lncRNA upstream 240111 29186529 ~ 29187994 (-) False XLOC_014859
TCONS_00029325 mRNA downstream 155974 28786149 ~ 28789409 (-) True XLOC_014854
TCONS_00029324 mRNA downstream 156917 28734048 ~ 28788466 (-) False XLOC_014854
TCONS_00029319 mRNA downstream 577970 28356753 ~ 28367413 (-) True XLOC_014852
TCONS_00029318 mRNA downstream 585350 28356753 ~ 28360033 (-) False XLOC_014852
TCONS_00029317 mRNA downstream 661539 28281537 ~ 28283844 (-) True XLOC_014851
TCONS_00029327 mRNA upstream 327967 29274385 ~ 29294457 (-) False XLOC_014861
TCONS_00029328 mRNA upstream 343903 29290321 ~ 29294457 (-) True XLOC_014861
TCONS_00029329 mRNA upstream 349773 29296191 ~ 29303788 (-) False XLOC_014862
TCONS_00029330 mRNA upstream 350984 29297402 ~ 29302249 (-) True XLOC_014862
TCONS_00029331 mRNA upstream 437068 29383486 ~ 29437109 (-) False XLOC_014863
TCONS_00029320 other downstream 503423 28441841 ~ 28441960 (-) True XLOC_014853
TCONS_00029305 other downstream 1339643 27589335 ~ 27605740 (-) True XLOC_014843
TCONS_00029303 other downstream 1360646 27581750 ~ 27584737 (-) True XLOC_014841
TCONS_00029297 other downstream 1370289 27571706 ~ 27575094 (-) True XLOC_014839
TCONS_00029289 other downstream 1476868 27468449 ~ 27468515 (-) True XLOC_014836
TCONS_00029333 other upstream 838677 29785095 ~ 29785212 (-) True XLOC_014865
TCONS_00029339 other upstream 915441 29861859 ~ 29873115 (-) False XLOC_014868
TCONS_00029343 other upstream 1402885 30349303 ~ 30350198 (-) False XLOC_014872
TCONS_00029352 other upstream 1482914 30429332 ~ 30431750 (-) False XLOC_014875
TCONS_00029367 other upstream 1806391 30752809 ~ 30799963 (-) True XLOC_014881

Expression Profile

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