RNA id: TU287483


Basic Information

Item Value
RNA id TU287483
length 1392
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G252136
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 36604263 ~ 36605654 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttggaaaaagtatgtgaacccctaggctaatgattCTCCAAACACTAATTAgagtcaggagtcaactaacctggagtccaatcaatgagacgagatgaGACGTTGGTTAGTGCTGCCTTGTCCtataaaaaaacactcacaaaatttgagtttgctattcacaagaatcaTTGCCTGAtatgaaccatgcctcgaacaaaagagatctcagaagacctaagattaagaattgttgacttgcataaagctggaaagggttacaaaattatctctaaaagccttgatcatcagtccacagtaagacaaattgtctttcagcactgttgctactctccctaggagtggccgtcctgcaaagatgactgcaagagcagcATGCGAGTGACAGcaaaagacttacagaaatctctggaacatgctaacatctctgacgagtctacgatatgtaaaacactaaacaagaatggtgttcgtAGGaagacaccacagaagaagccgaTGCTGTCcccaaaaaacattgctgcacaccTGGGGAACACACACTACTATGTGTGGAGAataaaaggcacagcacaccaacatcaaaacctcatgcCAACTGTAATTTATTGTGgagagagcatcatggtttgaggctgctttgctgcctcatggCTTGGACAGCTTGctaacattttgcaggagaatgttaggctatctatccgccaattgaagctcaacagaagttgagtGATTCAACAGGACAGCAactcaaaacacagaagtaaatcaacaacagaagaaaatacgccttctggagtggccaagGCAgaatcctgacctcaacccgatttgagatgctgtggcatgatctcaagagagcagttcacaccaggcatcccaagaatattgctgaactgaaacagttttgtaaagaggaatggtccaaaattcctcctgactgctatgcaggtctgatccgcaactacagaaaacgtttggttgaggttattgctgccaaaggagggtcaaccagttattaaatccaaggtttCACATACTTGTTctaccctgcactgtgaatgtttacaccatgtgttcaataaagacgtgaaaatgtataattgtttgtgtgttattagtttaagcagattGTGTTAGTCTATTGtcacctagatgaagatcagatcaaattttatgaccaatttatgcagaaatccaggtatttccaaagggttcacatactttttcttgcaactgtgtgtgtgtatgtaagtatatactgtacagttgaagtcggaagtttaatacacttaggttggaatcattaaagcTCGTTTGTCaaccaccacaaatttcttgttaacaaactatagttttggcaatcggttaggacatctacgttgtgcatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU287613 lncRNA downstream 12184 36591640 ~ 36592079 (-) True G252260
TU287608 lncRNA downstream 18791 36585238 ~ 36585472 (-) True G252255
TU287604 lncRNA downstream 20606 36583441 ~ 36583657 (-) True G252251
TU287601 lncRNA downstream 22615 36581391 ~ 36581648 (-) True G252248
TU287482 lncRNA downstream 203523 36399833 ~ 36400740 (-) True G252135
TU287590 lncRNA upstream 53022 36658676 ~ 36659052 (-) True G252237
TU287585 lncRNA upstream 54248 36659902 ~ 36660296 (-) True LOC110519931
TU287640 lncRNA upstream 139386 36745040 ~ 36782278 (-) True G252284
TU287659 lncRNA upstream 161759 36767413 ~ 36821166 (-) False G252299
TU287657 lncRNA upstream 162550 36768204 ~ 36769641 (-) True G252299
XM_021596781.2 mRNA downstream 35710 36544170 ~ 36568553 (-) True tent5ba
XM_036964824.1 mRNA downstream 98924 36486875 ~ 36505339 (-) True LOC110504056
LOC110519907 mRNA downstream 166509 36436381 ~ 36437754 (-) True LOC110519907
XM_036973958.1 mRNA downstream 486719 36112187 ~ 36117544 (-) True stmn1b
XM_036973959.1 mRNA downstream 487343 36112187 ~ 36116920 (-) False stmn1b
XM_021596793.2 mRNA upstream 6161 36611815 ~ 36628902 (-) False zdhhc18a
XM_021596801.2 mRNA upstream 6161 36611815 ~ 36628903 (-) False zdhhc18a
XM_021596803.2 mRNA upstream 6161 36611815 ~ 36628907 (-) False zdhhc18a
XM_036973981.1 mRNA upstream 6161 36611815 ~ 36629028 (-) False zdhhc18a
XM_036973980.1 mRNA upstream 6161 36611815 ~ 36629130 (-) True zdhhc18a
TU286962 other downstream 246292 36357483 ~ 36357971 (-) True G251681
TU286719 other downstream 459691 36140112 ~ 36144572 (-) True G251462
TU285142 other downstream 1707967 34895958 ~ 34896296 (-) True G249990
TU285130 other downstream 1714309 34889506 ~ 34889954 (-) True G249978
TU284611 other downstream 2244812 34357275 ~ 34359451 (-) True G249485
TU287636 other upstream 126191 36731845 ~ 36733440 (-) True gpatch3
TU291417 other upstream 2793607 39399261 ~ 39508702 (-) True LOC110519955
TU291595 other upstream 3038917 39644571 ~ 39645743 (-) True G255911
TU291727 other upstream 3212994 39818648 ~ 39818980 (-) True G256016
TU292346 other upstream 3716852 40322506 ~ 40322898 (-) True G256616

Expression Profile