RNA id: TU287145


Basic Information

Item Value
RNA id TU287145
length 3209
RNA type TUCP
GC content 0.46
exon number 4
gene id G251845
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 36623610 ~ 36627542 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCATGGGCCCACACAGCGTTGCACAGCAGTTGGTAAAGATGTTGTCGTAAGTGTAGGGATTCCCAGAGTCCTCTGCACCTCTTTTACTCAACCAGGAGCCTTTTATCTGCACAGGAAAGACAAAGTTAAGAAGCAGTCTGGAGACCAAGCAGGATCAAACATTCAAGTACTGTATATTTAGGTTAATAGAATGTGTAGTGCGGCCTTGTGGTCTAGCAAGAAAACCACTTCCTCCGGCACAATGTCTACCGTGTCTGAATAGGTTGAAATCTGCCACCTGCCCTTTCACCCAACCACTCTTATCTtcgacctctgtctctctcaccattTTGAGAAACAATCCTCAAAAAAAAGTAAGTGTAGTGTACTAaacaaaatataaagcaaaaaaataaacatctctttttcaggaccctgtctttcaaagataatttgtaaaaatccaaataacttcatagatcttcattgtaaagggtttaaacactgtttcccatgcttgttcaatgaaccataaacaattaatgaacatgcaaatgtggaacggtcgttaggacactaacagcttacagacggtgggcaattaaggtcacagttatgaaaacttaggacactatagaggcctttctactgactctgaaaaacaccaaaagatgcccagggtccctgctcatctgcgtgaacgtgccttaggcatgctgaaaggaggcatgaggactgcagatgtggccagggcaataaattgcaatgtccgtactgtgagacgctctacagggagacaggacggacagctgatcatccttgcagtggcagaccacgtgtaacaacatctgcacaggataggtacatccgaacattacacctgcgggacaggtacaggatggcaacaactacCGAGTTACaacaggaatgcacaatccctccatcagtgctcagactgtccgcaataggctgagagaggctggactgagggcttgtaggcctgttgtaaggcaggtcctcaccagatatcaccggcaacaacatcgcctaagGGCACAAATCCAccttcgctggaccagacaggactggcaaaaagtgctcttcactgaggagtcgtggttttgtctcaccaggggtgatggttggattcgcatttatcgtcaaaggaatgagcgtaacaccgaggcctgtactctggagcgggatcgatttggaggtggagggtccatggTCTGGGGGGGTgtctcacagcatcatcggactgagcttgtcgtcattgcaggcaatctcaacactgtgttacagggaaaacatcctcctccctcatgtggtacccttccttcaGGCTCATCCTgccatgaccctccagcatgacaatgccaccagccatactgctcgttctgtgtgtgatttcctgcaagaccggaatgtcagtgttctgccattgcctagcgaagagcccggatctcaatcccattgagcacgcctgggacctgctggattggagggtgagggctagggccattccccccagaaatgtccaggaacttgcaggtgccttggtggtggaagagtggggtaacatctcacagcaagaactggcaaatcttgtgcagtccatgaggagatgcactgcagtacttaatgcagctggtggccacaccagatactgactgttacttttgattttgacccctttgttcagggacacattattcaatttctgtgtctatggaacttgttcagtttgtgtctcagttgtggaatcttgttatgttcatacaaatatttacacataaatttgctgaaaataaacccagttgacagtgagaggatgtttctttttttgctgagtttattatagGTAGTTAATCTTCAGTTACTTGTGAAGCCTCTAATTTATCCAATGCAGTAATGAGTTATGTCCTGAGTAGCAACCTAGCGGTACCAAAAGCCCTGGTCTTCCCTAGAAAACCTATGTAAATGACCATCGCCAAAACAGGCCAAACACTTTTTTAGACAGAGGTTTTGGACTTTAAAATGTGCGTGATCAACTAGCATGATCAAGTTCGATCCCTACTGAATTATTTTAAGGTTCACTACAAATCGAGATATTGTATTAAATAgggatccattctgactactacatttgTCGTAACACAGGACCACGTGCTGACAGACCATTCACAGGCCGGCAGGCTATGTGTTGACTATCAGGCAGGATGAAAACAACTACGTTGACCATGATCCTTAGCGATTTTTGGTGCCATTCAGCAATATGGGGCGCTTCAAATTCAAATAGTTCTGGCCTCATACACCATCTGGAGTTTTCTATAGGAATACATGGATGATGTCAGCGCTATCACTATCTACTATTTTCAAGATCTATGGTTGGTACTCACATCTTCATTTGTTGTGAGGTTGAAGGCCACCAAGTATGTATGGAAACCTGAAAGCCCCAGAATAGACCAAATGGAGAAGAAGCAAATAACTAGTTCAACCACACTGGCAGGATTCTCCTGTAAGGCCAGAACTAAGCCATTCCCTCCTTGGGATCGTAGCGTGAGGTGTGTGACAACACAACCGAAGATGAAggaggtgtggaaggagagagagactatgaAGCTGTAGAAGAAGCGGTAGTTACGCTTGCCCACACAGTTCCCCACCCACGGGCAATGGTGATCGAACCGCTCTGAGGGCAGAACCACACAGTTGTCACACATGCTGCAGTGTGAGGTTCGAGGAGGGCGGAACATCTTGCAGGTGAAGCAATACTTAAGCTTCACCACCTGCTGGTTAATGAGGATTTCTTTGGTGCGCGGAGGGGGGTGGTACGTGGAGGAACCTGAGGTGTCTTGAATCAGGGGAGGGATCGATTCTCTGACATCAATACAATTGTGTTGTTGACATTAACAAGATCACATATGAAACAAAATGTTAACTGAATACAAATGCCGTTGAAGGATATTAATCTGTACTATGAACACCACTGAAACAGTTGATCCCATATATACCCCAGCTGGTCTAGCTCTTCAGCCATCACCCCAGTCTGTTACACTATATCCATCTTACCTATCTGCTTCTCAATGTCTGCAGCCTCATCTGGCAAGGTCCTAGGCAGGATTCCAGGGTCTGTAAAGCTGGTCTGCAGTAGGGAGGTgaccacaaacacaaacaacactccaccaatcacagGTATGCAGACGGTCAGGTGAGTCACCAGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU287136 lncRNA upstream 12296 36610884 ~ 36611314 (+) True G251840
TU287131 lncRNA upstream 26738 36596666 ~ 36596872 (+) True G251835
TU287128 lncRNA upstream 29762 36593638 ~ 36593848 (+) True G251832
TU287121 lncRNA upstream 38874 36584522 ~ 36584736 (+) True G251826
TU287064 lncRNA upstream 44303 36511574 ~ 36579307 (+) False G251773
TU287183 lncRNA downstream 25720 36653262 ~ 36653492 (+) True G251869
TU287185 lncRNA downstream 27740 36655282 ~ 36655615 (+) True G251871
TU287192 lncRNA downstream 30386 36657928 ~ 36658161 (+) True G251876
TU287197 lncRNA downstream 37215 36664757 ~ 36681878 (+) True G251881
TU287173 lncRNA downstream 67498 36695040 ~ 36766699 (+) True G251860
XM_021596759.2 mRNA upstream 236394 36381470 ~ 36387216 (+) False rcc1
XM_021596753.2 mRNA upstream 236394 36381471 ~ 36387216 (+) False rcc1
XM_021596757.2 mRNA upstream 236394 36381471 ~ 36387216 (+) True rcc1
XM_036973967.1 mRNA upstream 255294 36351326 ~ 36368316 (+) False phactr4b
XR_005044177.1 mRNA downstream 29925 36657467 ~ 36659553 (+) True LOC110519932
XM_021596823.2 mRNA downstream 791564 37419106 ~ 37424336 (+) True LOC110519936
XR_002472909.2 mRNA downstream 858041 37485583 ~ 37489562 (+) False LOC110519939
XR_002472908.2 mRNA downstream 859540 37487082 ~ 37489570 (+) False LOC110519939
XM_021596827.2 mRNA downstream 1061246 37688788 ~ 37691898 (+) True si:ch211-184m13.4
TU287065 other upstream 98437 36511574 ~ 36525173 (+) True G251773
TU285526 other upstream 1402238 35219832 ~ 35221372 (+) True LOC110519579
TU285376 other upstream 1450147 35153702 ~ 35173463 (+) True rab42b
TU284433 other upstream 2202998 34419890 ~ 34420612 (+) True G249323
TU284354 other upstream 2320703 34302572 ~ 34302907 (+) True G249245
TU288722 other downstream 1099406 37726948 ~ 37727338 (+) True G253299
TU289268 other downstream 1464780 38092322 ~ 38092734 (+) True G253834
TU289648 other downstream 1813624 38441166 ~ 38441734 (+) True G254204
TU289899 other downstream 1972945 38600487 ~ 38600866 (+) True G254445
TU290310 other downstream 2215968 38843510 ~ 38844556 (+) True G254816

Expression Profile