RNA id: TU287659


Basic Information

Item Value
RNA id TU287659
length 1407
lncRNA type inter_gene
GC content 0.33
exon number 5
gene id G252299
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 36767413 ~ 36821166 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acatacatgtattgtgtaacatgaagtcctatgagtgtcatctgatgaagatcatcaaaggttagtgattcattttatctctatttcagctttttgtgactctctttggctggaaaatggctgtatgtgtttttgtgactaggctctgacataacataatcatatggtgtgcttttgctgtaaagcttgtttgaaatcggacacagtgggtagattaacaagacgttaagctttaatttggtgtattgcacttgtgaatgaatgaaagttaaatatttcccaaaaatatttttttatttcactctctgccttttcagcggatgttgtcgaggggttccgctagcccTATTAAATCTGTTGAAATAGTTAGTGGTCCCCTTTGTATAGGGTTAGAACTTGCTGAAAACAGTCTACAGTGTTCATAACATCTCGAAGaaacataacaacaacaaaaaattatccagagtgcatcaaacatgatttagagcttgtttatggaaaaaaaagttatttcggtatttcaatgttgcaaatTGCCGAAAACTGTCCCCAATGTTCATTTCCAAtatttgctgtgctgtctatttgagatgaaatgaacattgtggacagttttcagcaagttgaaacATTGACATACAGAAGAAAcgttttttccataaacaagctctaaatcatgtttgatgcactctggatttccaatttttgctgtgctgtctatttgagatgaaatgaacattgtggacagttttcagcaagttgcattgaaatacagaaaaaactttttttccataaacaagctctaaatcatgtttgatgcactctggatgtcaaatttttgctgtgctgtctattcgAGTTGAAATGAACACTGTAGactgttttcagcaagttgcaacatttgaaatgcagaaataagcatttttccataaacaaggtctaaatcatgtttgatgaaatCTGGATGTAAAACAATAATTgttctgtttaaactagatgattggaacactgtggacatttttcagcaagttgcaacattgaagatcagaaataaccacatttccataaacaaggtctaaatcatgtttgatgaaatcaggatgtaaaaaaataattgttctgtttaaactagattaggaacactgtggacaattttcagcaagttgcaaaattgaaattcagaaaaaaacactaccataaacaaggtcaaaatcatgtttgatgcacaatttttttgttatttttacactagatgataggaacactgtggacaattttcagcaagttgcaaaatTGAAATTCAGAAATACccaattttccataaacaaggtctaaatcatgtttgatgaaatcaggatgtaaaaaaaatggttctacatttttttaatggggcatgcctatttaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU287585 lncRNA downstream 107117 36659902 ~ 36660296 (-) True LOC110519931
TU287590 lncRNA downstream 108361 36658676 ~ 36659052 (-) True G252237
TU287483 lncRNA downstream 161759 36604263 ~ 36605654 (-) True G252136
TU287613 lncRNA downstream 175334 36591640 ~ 36592079 (-) True G252260
TU287608 lncRNA downstream 181941 36585238 ~ 36585472 (-) True G252255
TU287737 lncRNA upstream 71367 36892533 ~ 36898281 (-) False LOC110504063
TU287741 lncRNA upstream 71367 36892533 ~ 36906191 (-) False LOC110504063
TU287743 lncRNA upstream 71367 36892533 ~ 36898281 (-) False LOC110504063
TU287740 lncRNA upstream 73795 36894961 ~ 36896141 (-) True LOC110504063
TU287717 lncRNA upstream 110842 36932008 ~ 36932659 (-) True G252355
XM_036973998.1 mRNA downstream 13081 36731832 ~ 36754332 (-) False gpatch3
XM_021596822.2 mRNA downstream 13367 36731832 ~ 36754046 (-) False gpatch3
XM_021596820.2 mRNA downstream 19470 36731832 ~ 36747943 (-) False gpatch3
XM_036973995.1 mRNA downstream 56504 36695035 ~ 36710909 (-) True LOC110519934
XM_036973993.1 mRNA downstream 56509 36695035 ~ 36710904 (-) False LOC110519934
LOC110504063 mRNA upstream 61148 36882314 ~ 36892536 (-) False LOC110504063
XM_021596824.2 mRNA upstream 589102 37410268 ~ 37415261 (-) False LOC110519937
XM_021596826.2 mRNA upstream 622469 37443635 ~ 37641452 (-) True clybl
XR_005039852.1 mRNA upstream 867609 37688775 ~ 37692005 (-) False LOC118944514
XM_036974000.1 mRNA upstream 993543 37814709 ~ 38062756 (-) False LOC110519943
TU287636 other downstream 33973 36731845 ~ 36733440 (-) True gpatch3
TU286962 other downstream 409442 36357483 ~ 36357971 (-) True G251681
TU286719 other downstream 622841 36140112 ~ 36144572 (-) True G251462
TU285142 other downstream 1871117 34895958 ~ 34896296 (-) True G249990
TU285130 other downstream 1877459 34889506 ~ 34889954 (-) True G249978
TU291417 other upstream 2578095 39399261 ~ 39508702 (-) True LOC110519955
TU291595 other upstream 2823405 39644571 ~ 39645743 (-) True G255911
TU291727 other upstream 2997482 39818648 ~ 39818980 (-) True G256016
TU292346 other upstream 3501340 40322506 ~ 40322898 (-) True G256616
TU292362 other upstream 3514044 40335210 ~ 40335440 (-) True G256632

Expression Profile