RNA id: TU287657


Basic Information

Item Value
RNA id TU287657
length 577
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G252299
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 36767413 ~ 36821166 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtttaaactagatgataggaacactggacaattttcagcaagttgcaacattgaaatacagaaataactttttCTTtgcataaacaagctctaaatcatgtttgatgcactctggatgtccaatttttgctgtgatgtctatttgagatgaaatgaacattgtggacagttttcagcaagttgcaacattgaaatacagaaataacttttttttccataaacaagctctaaatcatgtttgatgcactctggatgtccaattttttgCTGTGCTgtctatttgagatgagatgaacattgtggacagttttcagcaagttgcaacattgaaatacagaaataacttttttttccataaacaaggtcaaaATCATGTTCCATGCAcaattgttttgttatttttaccctagatgataggaacactgtggacaattttcagcaagttgcaaaatTGAAattcagaaataaccacttttccataaacaaggtctaagtTATGTTTGATGCAGTCAGGATGTAAAAAAAATGgttctgtttaaactagatgataggaacactgtggacaattttcagcaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU287585 lncRNA downstream 107908 36659902 ~ 36660296 (-) True LOC110519931
TU287590 lncRNA downstream 109152 36658676 ~ 36659052 (-) True G252237
TU287483 lncRNA downstream 162550 36604263 ~ 36605654 (-) True G252136
TU287613 lncRNA downstream 176125 36591640 ~ 36592079 (-) True G252260
TU287608 lncRNA downstream 182732 36585238 ~ 36585472 (-) True G252255
TU287737 lncRNA upstream 122892 36892533 ~ 36898281 (-) False LOC110504063
TU287741 lncRNA upstream 122892 36892533 ~ 36906191 (-) False LOC110504063
TU287743 lncRNA upstream 122892 36892533 ~ 36898281 (-) False LOC110504063
TU287740 lncRNA upstream 125320 36894961 ~ 36896141 (-) True LOC110504063
TU287717 lncRNA upstream 162367 36932008 ~ 36932659 (-) True G252355
XM_036973998.1 mRNA downstream 13872 36731832 ~ 36754332 (-) False gpatch3
XM_021596822.2 mRNA downstream 14158 36731832 ~ 36754046 (-) False gpatch3
XM_021596820.2 mRNA downstream 20261 36731832 ~ 36747943 (-) False gpatch3
XM_036973995.1 mRNA downstream 57295 36695035 ~ 36710909 (-) True LOC110519934
XM_036973993.1 mRNA downstream 57300 36695035 ~ 36710904 (-) False LOC110519934
LOC110504063 mRNA upstream 112673 36882314 ~ 36892536 (-) False LOC110504063
XM_021596824.2 mRNA upstream 640627 37410268 ~ 37415261 (-) False LOC110519937
XM_021596826.2 mRNA upstream 673994 37443635 ~ 37641452 (-) True clybl
XR_005039852.1 mRNA upstream 919134 37688775 ~ 37692005 (-) False LOC118944514
XM_036974000.1 mRNA upstream 1045068 37814709 ~ 38062756 (-) False LOC110519943
TU287636 other downstream 34764 36731845 ~ 36733440 (-) True gpatch3
TU286962 other downstream 410233 36357483 ~ 36357971 (-) True G251681
TU286719 other downstream 623632 36140112 ~ 36144572 (-) True G251462
TU285142 other downstream 1871908 34895958 ~ 34896296 (-) True G249990
TU285130 other downstream 1878250 34889506 ~ 34889954 (-) True G249978
TU291417 other upstream 2629620 39399261 ~ 39508702 (-) True LOC110519955
TU291595 other upstream 2874930 39644571 ~ 39645743 (-) True G255911
TU291727 other upstream 3049007 39818648 ~ 39818980 (-) True G256016
TU292346 other upstream 3552865 40322506 ~ 40322898 (-) True G256616
TU292362 other upstream 3565569 40335210 ~ 40335440 (-) True G256632

Expression Profile