RNA id: TU287347


Basic Information

Item Value
RNA id TU287347
length 1485
lncRNA type inter_gene
GC content 0.33
exon number 5
gene id G252008
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 36888190 ~ 36906601 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCAGGAACCCACCATTTGAGAAACACTGACCTAAGGTATTTATCATGCGCAAATAACCATGGTCAATATCAACATGTTTAGCCTTTTTTTGGTTGGATACCTAAGACAGTTTCCCCATACACCAAAGAACATCCAAACGGGTTATTAGACTTGAATTAACACTTTATTAAAACCCTttcattgtggacagttttcagcaagttgcaacattgaaatacagaaaaacTTTTttacataaacaagctctaaatcatgtttgatgcactctggatgtccatgtTTTGCTGTGCtttctatttgagatgaaatgaacattgtggacagttttcagcaagttgcaacattgaaatacagaaaaaacTTTTttacataaacaagctctaaatcatgtttgatgcactctggatgtccatgttttgctgtgctgtctatttgagatgaaattaacattgtggacagttttcagcaagttgaaacattgaaatacagattttatttttttccataaacaagctctaaatcatgtttgatgcactctggatgtccattttttgctgtgctgtctatttgagatgaaatgaacattgtggacagttttcagcaagttgcaacattgaaatacagaaaaaaatgtttttccataaacaagctctaaatcatgtttgatgcactctggatgtccaatttttgctgtgctgtctatttgagatgaaatgaacattgtggacagttttcagcaagttgcaacattgaaatacagaaacaACTTTTttacataaacaagctctaaatcatgtttgatgcactttggatGTTAAATTTTTGCTGTGCtttctatttgagatgaaatgaacattgtggacagttttcagcaagttgcaacattgaaatacagaaaaaaacatttatttccataaacaagctctaaatcatgtttgatgcactctggatgtccatttttttgctgtgctgtctatttgagatgaaatgaacattgtggacagttttcagcaagttgcaacattgaaatacagaaaaaactgtttttccataaacaagctctaaatcatgtttgatgcactctggatgtccaattcttgctgtgctgtctatttgagattaaatgaacattgtggacagttttcagcaagttgcaacattgaaatgcagaaataagcatttttcaaaaaacaagctctaaatcatgtttgttacACTACTGGATAAACTTTTttttgttatgtttattcgagatgttatgaaaacactgtagactgttttcagcaagttgcaacattgaaaggcagaaataagcactattccataaaaaagctctaaatcatgtttgatgcactctgggtaaaaaaaaacatttgttatgtttattcgagttgatattgaaaacactgttttcagcaagttgcaacattgaaatgcagaaataagcactaccataaacaagctctaaatcatgtttgatttac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU287334 lncRNA upstream 14641 36877753 ~ 36878007 (+) True G251999
TU287261 lncRNA upstream 119846 36767412 ~ 36772802 (+) True G251938
TU287173 lncRNA upstream 125949 36695040 ~ 36766699 (+) True G251860
TU287234 lncRNA upstream 143391 36734526 ~ 36749257 (+) True G251914
TU287197 lncRNA upstream 210770 36664757 ~ 36681878 (+) True G251881
TU287429 lncRNA downstream 108153 37014754 ~ 37015310 (+) True G252083
TU287448 lncRNA downstream 148158 37054759 ~ 37065840 (+) True G252101
TU287873 lncRNA downstream 191097 37097698 ~ 37098146 (+) True G252495
TU287934 lncRNA downstream 254397 37160998 ~ 37161528 (+) True G252554
TU288117 lncRNA downstream 371347 37277948 ~ 37278162 (+) True G252725
XR_005044177.1 mRNA upstream 233095 36657467 ~ 36659553 (+) True LOC110519932
XM_021596759.2 mRNA upstream 505432 36381470 ~ 36387216 (+) False rcc1
XM_021596753.2 mRNA upstream 505432 36381471 ~ 36387216 (+) False rcc1
XM_021596757.2 mRNA upstream 505432 36381471 ~ 36387216 (+) True rcc1
XM_036973978.1 mRNA upstream 524332 36353282 ~ 36368316 (+) False phactr4b
XM_021596823.2 mRNA downstream 512505 37419106 ~ 37424336 (+) True LOC110519936
XR_002472909.2 mRNA downstream 578982 37485583 ~ 37489562 (+) False LOC110519939
XR_002472908.2 mRNA downstream 580481 37487082 ~ 37489570 (+) False LOC110519939
XM_021596827.2 mRNA downstream 782187 37688788 ~ 37691898 (+) True si:ch211-184m13.4
XM_021596828.2 mRNA downstream 842094 37748695 ~ 37755452 (+) False LOC110519942
TU287145 other upstream 265106 36623610 ~ 36627542 (+) True G251845
TU287065 other upstream 367475 36511574 ~ 36525173 (+) True G251773
TU285526 other upstream 1671276 35219832 ~ 35221372 (+) True LOC110519579
TU285376 other upstream 1719185 35153702 ~ 35173463 (+) True rab42b
TU284433 other upstream 2472036 34419890 ~ 34420612 (+) True G249323
TU288722 other downstream 820347 37726948 ~ 37727338 (+) True G253299
TU289268 other downstream 1185721 38092322 ~ 38092734 (+) True G253834
TU289648 other downstream 1534565 38441166 ~ 38441734 (+) True G254204
TU289899 other downstream 1693886 38600487 ~ 38600866 (+) True G254445
TU290310 other downstream 1936909 38843510 ~ 38844556 (+) True G254816

Expression Profile