RNA id: TU287717



Basic Information


Item Value
RNA id TU287717
length 530
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G252355
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 36932008 ~ 36932659 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


attctattcttctgaaagatcacattgcgtaagtggataggattgattataaaaaaacgtttgacatgtttctgtggacattatggatattatttggaatatactTCCTGtgaatttctgaacataatgcgacAAACAAAAttaggtattttgggtataaaaataatctttatggaacaaaaggaacatttgttgtgtaactgtgAGTCTGGTGAGTGAAAACAcccgaagatcatcaaaagtaaacgattaatttgattgcttttctgattttcgtgacctagctacttaatgcttagtgtacataatgttttgctatgctatcgataaacttacacaaacgcttgtattgctttcgctgtaaagcataatttcaaaatctgagacgacaggtggattaacaaaaggctaagctgtgttttgcaatattgcacttgtgatttcatgaatatgaatattttttagtaatattatttgactgtggtaCTATGCTTTTCAGCGattgctgacgaaaatgatcccgctaatgg

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU287741 lncRNA downstream 25817 36892533 ~ 36906191 (-) False LOC110504063
TU287737 lncRNA downstream 33727 36892533 ~ 36898281 (-) False LOC110504063
TU287743 lncRNA downstream 33727 36892533 ~ 36898281 (-) False LOC110504063
TU287740 lncRNA downstream 35867 36894961 ~ 36896141 (-) True LOC110504063
TU287659 lncRNA downstream 110842 36767413 ~ 36821166 (-) False G252299
TU287775 lncRNA upstream 23625 36956284 ~ 37025688 (-) True G252401
TU287840 lncRNA upstream 114804 37047463 ~ 37049953 (-) True G252462
TU287864 lncRNA upstream 157573 37090232 ~ 37090679 (-) True G252486
TU287874 lncRNA upstream 164992 37097651 ~ 37098373 (-) True G252496
TU287885 lncRNA upstream 172815 37105474 ~ 37105705 (-) True G252507
LOC110504063 mRNA downstream 39472 36882314 ~ 36892536 (-) False LOC110504063
XM_036973998.1 mRNA downstream 177676 36731832 ~ 36754332 (-) False gpatch3
XM_021596822.2 mRNA downstream 177962 36731832 ~ 36754046 (-) False gpatch3
XM_021596820.2 mRNA downstream 184065 36731832 ~ 36747943 (-) False gpatch3
XM_036973995.1 mRNA downstream 221099 36695035 ~ 36710909 (-) True LOC110519934
XM_021596824.2 mRNA upstream 477609 37410268 ~ 37415261 (-) False LOC110519937
XM_021596826.2 mRNA upstream 510976 37443635 ~ 37641452 (-) True clybl
XR_005039852.1 mRNA upstream 756116 37688775 ~ 37692005 (-) False LOC118944514
XM_036974000.1 mRNA upstream 882050 37814709 ~ 38062756 (-) False LOC110519943
XM_036974001.1 mRNA upstream 882050 37814709 ~ 38062756 (-) False LOC110519943
TU287636 other downstream 198568 36731845 ~ 36733440 (-) True gpatch3
TU286962 other downstream 574037 36357483 ~ 36357971 (-) True G251681
TU286719 other downstream 787436 36140112 ~ 36144572 (-) True G251462
TU285142 other downstream 2035712 34895958 ~ 34896296 (-) True G249990
TU285130 other downstream 2042054 34889506 ~ 34889954 (-) True G249978
TU291417 other upstream 2466602 39399261 ~ 39508702 (-) True LOC110519955
TU291595 other upstream 2711912 39644571 ~ 39645743 (-) True G255911
TU291727 other upstream 2885989 39818648 ~ 39818980 (-) True G256016
TU292346 other upstream 3389847 40322506 ~ 40322898 (-) True G256616
TU292362 other upstream 3402551 40335210 ~ 40335440 (-) True G256632

Expression Profile


TU287717 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 12.
End of interactive chart.

TU287717 Expression in each Bioproject

Bar chart with 18 bars.
TU287717 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.