RNA id: TU287775


Basic Information

Item Value
RNA id TU287775
length 241
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G252401
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 36956284 ~ 37025688 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtaggagaaatcacatcgttttgttcatcacgtttggctaagaaaaaaaaaacgaaaattcagtcattataacgccaaacttttttccaaattaactccataatatcgacagaaacatggcaaacgttgtttagaatcaatcctcaaggtgtttttcacatatctattcgatgatatatCATTTGTggaagtttggtttctcctctgaacgaCATGGAAAAATGCATGCAGCTGGAgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU287717 lncRNA downstream 23625 36932008 ~ 36932659 (-) True G252355
TU287741 lncRNA downstream 50093 36892533 ~ 36906191 (-) False LOC110504063
TU287737 lncRNA downstream 58003 36892533 ~ 36898281 (-) False LOC110504063
TU287743 lncRNA downstream 58003 36892533 ~ 36898281 (-) False LOC110504063
TU287740 lncRNA downstream 60143 36894961 ~ 36896141 (-) True LOC110504063
TU287840 lncRNA upstream 21775 37047463 ~ 37049953 (-) True G252462
TU287864 lncRNA upstream 64544 37090232 ~ 37090679 (-) True G252486
TU287874 lncRNA upstream 71963 37097651 ~ 37098373 (-) True G252496
TU287885 lncRNA upstream 79786 37105474 ~ 37105705 (-) True G252507
TU287893 lncRNA upstream 85085 37110773 ~ 37110993 (-) True G252515
LOC110504063 mRNA downstream 63748 36882314 ~ 36892536 (-) False LOC110504063
XM_036973998.1 mRNA downstream 201952 36731832 ~ 36754332 (-) False gpatch3
XM_021596822.2 mRNA downstream 202238 36731832 ~ 36754046 (-) False gpatch3
XM_021596820.2 mRNA downstream 208341 36731832 ~ 36747943 (-) False gpatch3
XM_036973995.1 mRNA downstream 245375 36695035 ~ 36710909 (-) True LOC110519934
XM_021596824.2 mRNA upstream 384580 37410268 ~ 37415261 (-) False LOC110519937
XM_021596826.2 mRNA upstream 417947 37443635 ~ 37641452 (-) True clybl
XR_005039852.1 mRNA upstream 663087 37688775 ~ 37692005 (-) False LOC118944514
XM_036974000.1 mRNA upstream 789021 37814709 ~ 38062756 (-) False LOC110519943
XM_036974001.1 mRNA upstream 789021 37814709 ~ 38062756 (-) False LOC110519943
TU287636 other downstream 222844 36731845 ~ 36733440 (-) True gpatch3
TU286962 other downstream 598313 36357483 ~ 36357971 (-) True G251681
TU286719 other downstream 811712 36140112 ~ 36144572 (-) True G251462
TU285142 other downstream 2059988 34895958 ~ 34896296 (-) True G249990
TU285130 other downstream 2066330 34889506 ~ 34889954 (-) True G249978
TU291417 other upstream 2373573 39399261 ~ 39508702 (-) True LOC110519955
TU291595 other upstream 2618883 39644571 ~ 39645743 (-) True G255911
TU291727 other upstream 2792960 39818648 ~ 39818980 (-) True G256016
TU292346 other upstream 3296818 40322506 ~ 40322898 (-) True G256616
TU292362 other upstream 3309522 40335210 ~ 40335440 (-) True G256632

Expression Profile