RNA id: TU288198


Basic Information

Item Value
RNA id TU288198
length 245
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G252802
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 37329828 ~ 37330072 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaattagagagagtatacttaaattcacacaggacaccggataggacaggagaagtactccagatataacaaactgaccctatccccccgacacataaactactgcagcataaatactggaggctgagacaggaggggtcaggagacactgtggctccatccgaggacacccccggacagggccaaacaggaaggatataaccccacccactttgccaaagcacagcccccacaccactagaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU288173 lncRNA downstream 16048 37313159 ~ 37313780 (-) True G252778
TU288158 lncRNA downstream 26204 37303389 ~ 37303624 (-) True G252763
TU288155 lncRNA downstream 29600 37300006 ~ 37300228 (-) True G252760
TU288150 lncRNA downstream 31843 37297764 ~ 37297985 (-) True G252756
TU288139 lncRNA downstream 38510 37291059 ~ 37291318 (-) True G252745
TU288199 lncRNA upstream 139 37330211 ~ 37330508 (-) True G252803
TU288230 lncRNA upstream 2686 37332758 ~ 37353371 (-) True G252832
TU288247 lncRNA upstream 25286 37355358 ~ 37355591 (-) True G252849
TU288248 lncRNA upstream 27661 37357733 ~ 37358345 (-) True G252850
TU288252 lncRNA upstream 34554 37364626 ~ 37364847 (-) True G252853
LOC110504063 mRNA downstream 437292 36882314 ~ 36892536 (-) False LOC110504063
XM_036973998.1 mRNA downstream 575496 36731832 ~ 36754332 (-) False gpatch3
XM_021596822.2 mRNA downstream 575782 36731832 ~ 36754046 (-) False gpatch3
XM_021596820.2 mRNA downstream 581885 36731832 ~ 36747943 (-) False gpatch3
XM_036973995.1 mRNA downstream 618919 36695035 ~ 36710909 (-) True LOC110519934
XM_021596824.2 mRNA upstream 80196 37410268 ~ 37415261 (-) False LOC110519937
XM_021596826.2 mRNA upstream 113563 37443635 ~ 37641452 (-) True clybl
XR_005039852.1 mRNA upstream 358703 37688775 ~ 37692005 (-) False LOC118944514
XM_036974000.1 mRNA upstream 484637 37814709 ~ 38062756 (-) False LOC110519943
XM_036974001.1 mRNA upstream 484637 37814709 ~ 38062756 (-) False LOC110519943
TU287636 other downstream 596388 36731845 ~ 36733440 (-) True gpatch3
TU286962 other downstream 971857 36357483 ~ 36357971 (-) True G251681
TU286719 other downstream 1185256 36140112 ~ 36144572 (-) True G251462
TU285142 other downstream 2433532 34895958 ~ 34896296 (-) True G249990
TU285130 other downstream 2439874 34889506 ~ 34889954 (-) True G249978
TU291417 other upstream 2069189 39399261 ~ 39508702 (-) True LOC110519955
TU291595 other upstream 2314499 39644571 ~ 39645743 (-) True G255911
TU291727 other upstream 2488576 39818648 ~ 39818980 (-) True G256016
TU292346 other upstream 2992434 40322506 ~ 40322898 (-) True G256616
TU292362 other upstream 3005138 40335210 ~ 40335440 (-) True G256632

Expression Profile