RNA id: TU288230


Basic Information

Item Value
RNA id TU288230
length 715
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G252832
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 37332758 ~ 37353371 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aacttctgatgttttcaatgaggatactctcagttagatagcagatgctcagtttttccaaaaagattccttgtgtattagaaatagctccgttttatacatcacatttggccaccaaaaaaaatccgaaaattcagtcctcaaaacgcgaacttttttccaaattaactccataatatcgactgaaaacatggcaaacgttgtttagaatcaatcatcaaggtgtttttcacatatctcttcgatgatatatcattcgtggaagcatggtttctcctctcaatcaaatggaaaaatacttgcacctggctttgcgcaccagtttcgacgcaggacaccaggcggacacttggaaaatgtagtctcttatggtcaatcttccaatgatatggctacaaatacgtcacaatgctgccgacatcttggggaaacggcagaaggtctaagcttattcctgtcgcattcacagccatataaaggagacattagaaaacagagcttcagaaattctgctcatttcctgtttgacgtttcatcttggtttcgcctgtagaatgagttctggggcacttacagacaaaatctttgcagattctgaaacttcagagtgttttctagaATATgtatagtcgagcatcttttcgtgacaaaatatcgcgcttaaaacgggaacgttttttatccaaaaatgaaatagcgcccctagagatgcaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU288199 lncRNA downstream 2250 37330211 ~ 37330508 (-) True G252803
TU288198 lncRNA downstream 2686 37329828 ~ 37330072 (-) True G252802
TU288173 lncRNA downstream 18978 37313159 ~ 37313780 (-) True G252778
TU288158 lncRNA downstream 29134 37303389 ~ 37303624 (-) True G252763
TU288155 lncRNA downstream 32530 37300006 ~ 37300228 (-) True G252760
TU288247 lncRNA upstream 1987 37355358 ~ 37355591 (-) True G252849
TU288248 lncRNA upstream 4362 37357733 ~ 37358345 (-) True G252850
TU288252 lncRNA upstream 11255 37364626 ~ 37364847 (-) True G252853
TU288253 lncRNA upstream 12530 37365901 ~ 37366135 (-) True G252854
TU288255 lncRNA upstream 13901 37367272 ~ 37367473 (-) True G252856
LOC110504063 mRNA downstream 440222 36882314 ~ 36892536 (-) False LOC110504063
XM_036973998.1 mRNA downstream 578426 36731832 ~ 36754332 (-) False gpatch3
XM_021596822.2 mRNA downstream 578712 36731832 ~ 36754046 (-) False gpatch3
XM_021596820.2 mRNA downstream 584815 36731832 ~ 36747943 (-) False gpatch3
XM_036973995.1 mRNA downstream 621849 36695035 ~ 36710909 (-) True LOC110519934
XM_021596824.2 mRNA upstream 56897 37410268 ~ 37415261 (-) False LOC110519937
XM_021596826.2 mRNA upstream 90264 37443635 ~ 37641452 (-) True clybl
XR_005039852.1 mRNA upstream 335404 37688775 ~ 37692005 (-) False LOC118944514
XM_036974000.1 mRNA upstream 461338 37814709 ~ 38062756 (-) False LOC110519943
XM_036974001.1 mRNA upstream 461338 37814709 ~ 38062756 (-) False LOC110519943
TU287636 other downstream 599318 36731845 ~ 36733440 (-) True gpatch3
TU286962 other downstream 974787 36357483 ~ 36357971 (-) True G251681
TU286719 other downstream 1188186 36140112 ~ 36144572 (-) True G251462
TU285142 other downstream 2436462 34895958 ~ 34896296 (-) True G249990
TU285130 other downstream 2442804 34889506 ~ 34889954 (-) True G249978
TU291417 other upstream 2045890 39399261 ~ 39508702 (-) True LOC110519955
TU291595 other upstream 2291200 39644571 ~ 39645743 (-) True G255911
TU291727 other upstream 2465277 39818648 ~ 39818980 (-) True G256016
TU292346 other upstream 2969135 40322506 ~ 40322898 (-) True G256616
TU292362 other upstream 2981839 40335210 ~ 40335440 (-) True G256632

Expression Profile