RNA id: TU288757


Basic Information

Item Value
RNA id TU288757
length 413
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G253333
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 37761458 ~ 37761870 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcaaaatcaaaagtaacagtcagtatttggtgtggccaacagatgcattaagcactgcagtgcatttcctcctcatggactgcaccagatttgccagttcttgctgtgagatgttaccccacactTCCACCAAGGGACCTGCAAGTtctctgacatttctggggggaatggtcctagccctcaccctccgattcaacaggttccagacgtgctcaatggtattgagatccgggctcttcgctggccatggcagaacactgacatttctgccttgcaggaaatcatgcacagaacaagcagtatggctggtggcattgtcatgctggagggtcatgtcaggatgagcctgcaggaaaggtaccacatgagggaggaggttgtcttccctgtaacgcacagcgttgagatttcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU288755 lncRNA downstream 4748 37748664 ~ 37756710 (-) False G253331
TU288754 lncRNA downstream 4748 37752395 ~ 37756710 (-) True G253331
TU288724 lncRNA downstream 32858 37728400 ~ 37728600 (-) True G253301
TU288721 lncRNA downstream 34602 37726636 ~ 37726856 (-) True G253298
TU288685 lncRNA downstream 69254 37688790 ~ 37692204 (-) True LOC118944514
TU288764 lncRNA upstream 7842 37769712 ~ 37769963 (-) True G253340
TU288769 lncRNA upstream 10992 37772862 ~ 37773174 (-) True G253345
TU288824 lncRNA upstream 44748 37806618 ~ 37806847 (-) True G253400
TU289227 lncRNA upstream 304354 38066224 ~ 38066439 (-) True G253793
TU289246 lncRNA upstream 317055 38078925 ~ 38079174 (-) True G253812
XR_005039852.1 mRNA downstream 69453 37688775 ~ 37692005 (-) False LOC118944514
XM_021596826.2 mRNA downstream 120006 37443635 ~ 37641452 (-) True clybl
XM_021596824.2 mRNA downstream 346197 37410268 ~ 37415261 (-) False LOC110519937
LOC110504063 mRNA downstream 868922 36882314 ~ 36892536 (-) False LOC110504063
XM_036973998.1 mRNA downstream 1007126 36731832 ~ 36754332 (-) False gpatch3
XM_036974000.1 mRNA upstream 52839 37814709 ~ 38062756 (-) False LOC110519943
XM_036974001.1 mRNA upstream 52839 37814709 ~ 38062756 (-) False LOC110519943
XM_036974002.1 mRNA upstream 52839 37814709 ~ 38062756 (-) False LOC110519943
XM_036974003.1 mRNA upstream 52839 37814709 ~ 38062756 (-) True LOC110519943
XM_021596836.2 mRNA upstream 501928 38263798 ~ 38401288 (-) False LOC110519945
TU287636 other downstream 1028018 36731845 ~ 36733440 (-) True gpatch3
TU286962 other downstream 1403487 36357483 ~ 36357971 (-) True G251681
TU286719 other downstream 1616886 36140112 ~ 36144572 (-) True G251462
TU285142 other downstream 2865162 34895958 ~ 34896296 (-) True G249990
TU285130 other downstream 2871504 34889506 ~ 34889954 (-) True G249978
TU291417 other upstream 1637391 39399261 ~ 39508702 (-) True LOC110519955
TU291595 other upstream 1882701 39644571 ~ 39645743 (-) True G255911
TU291727 other upstream 2056778 39818648 ~ 39818980 (-) True G256016
TU292346 other upstream 2560636 40322506 ~ 40322898 (-) True G256616
TU292362 other upstream 2573340 40335210 ~ 40335440 (-) True G256632

Expression Profile