RNA id: TCONS_00029788



Basic Information


Item Value
RNA id TCONS_00029788
length 1163
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id XLOC_014859
representative True

Chromosome Information


Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 29186529 ~ 29188136 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


TTCACTTCATTATGAACCTCATtatcaaaccaaaacaaaaatgatattgTCTAACACTATTTACTAATTACAACTTTTTGTATAGTGTCCGAGGCAGAggagacacatcaaccagcaagtgtgtaactTATCAGgaaaatgactgactgaatggatGACTGTCAGGGTTGCAAGCAGGACATACATGTTACAGTGAGCGCTGAATTTGAGAGAGAAGCCACTGTGCACCGTGGATCTTTACAGCTGCTGAGGAGCTCTTGGAGTAAGACAGAGATCTGAGATTAAAGTTGGACAATGAAGAAACGACAAGAACTGAACGGCTTGTGAGGGCAGTAATGTTGACCTGAGCAGGGGCCTTCTACAGGGGACCGCCTAAAGGTACTggcatcattatcatcatcattatcatcatcatcattgaagGTGTTAAAGTTCTTATAGACCTCATCTTTACCAGAATCAGGCAAACTCCTCTTTCACTCCGCCCAAAGCCCCAGCTGGACTGTTTTGGCCCAGGGTATCCGATCAGGCCACGGAAGTGACTGTGGAAACTTGACTTGCCCTGGCTCGCATTGGCACGCTAACTTAAGTCGCGAGAGTGAAAACACGGCTCTTGACTACATTCCCAGAGCTTGTGTCCACCTGGGTTTGACATATGCATTTTAACTGTGACAAAGAATGGTGTTTTAACAAGTGACTGGTTAACACTGGAAGATATTAGAGGGTAGTATTCCCATGAACTGTGGTGTCCTCTTTGCTTCAATGAATCTGCATTATTCTGGCAAATAATACCTTTCATGCATTAAATCACATAAATTTCACTCTAAgtctattgttttaaataatattgtttaatgtcCAGTTGTTTGAAACTGCTGTTTAAAATAAGATGATCAAAGTCCTTGTTAAGATGAtcagtttgtttaaatgtacatgttttattgtgtattatatGATGTATTGTCTATTATGAGATTGTTGTTAGCCTGTATTGTGGCTCCACACTGCTGAACAGGCTCCACTAATTaagtaaaatttaataaattttagctCTAATCCATACTTGTTgagtttaattaatattattgcttgtaatctgttgcctcaattttattgtgtagatataaagcaatattttctagAGCTGATGACCAGGCTCCACa

Function


GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0140014 mitotic nuclear division biological_process
GO:0048285 organelle fission biological_process
GO:0007049 cell cycle biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0000280 nuclear division biological_process
GO:0016235 aggresome cellular_component
GO:0015631 tubulin binding molecular_function
GO:0008017 microtubule binding molecular_function

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00030277 lncRNA downstream 64322 29103407 ~ 29122225 (-) True XLOC_014858
TCONS_00030276 lncRNA downstream 75653 29103407 ~ 29110894 (-) False XLOC_014858
TCONS_00030275 lncRNA downstream 75741 29103407 ~ 29110806 (-) False XLOC_014858
TCONS_00030274 lncRNA downstream 155748 29022836 ~ 29030799 (-) True XLOC_014857
TCONS_00030273 lncRNA downstream 155769 28945383 ~ 29030778 (-) False XLOC_014857
TCONS_00030280 lncRNA upstream 13907 29202043 ~ 29271026 (-) False XLOC_014860
TCONS_00030281 lncRNA upstream 47570 29235706 ~ 29271026 (-) False XLOC_014860
TCONS_00030282 lncRNA upstream 66280 29254416 ~ 29271026 (-) True XLOC_014860
TCONS_00030283 lncRNA upstream 562192 29750328 ~ 29751667 (-) False XLOC_014864
TCONS_00030284 lncRNA upstream 562192 29750328 ~ 29754368 (-) False XLOC_014864
TCONS_00029325 mRNA downstream 397138 28786149 ~ 28789409 (-) True XLOC_014854
TCONS_00029324 mRNA downstream 398081 28734048 ~ 28788466 (-) False XLOC_014854
TCONS_00029319 mRNA downstream 819134 28356753 ~ 28367413 (-) True XLOC_014852
TCONS_00029318 mRNA downstream 826514 28356753 ~ 28360033 (-) False XLOC_014852
TCONS_00029317 mRNA downstream 902703 28281537 ~ 28283844 (-) True XLOC_014851
TCONS_00029327 mRNA upstream 86249 29274385 ~ 29294457 (-) False XLOC_014861
TCONS_00029328 mRNA upstream 102185 29290321 ~ 29294457 (-) True XLOC_014861
TCONS_00029329 mRNA upstream 108055 29296191 ~ 29303788 (-) False XLOC_014862
TCONS_00029330 mRNA upstream 109266 29297402 ~ 29302249 (-) True XLOC_014862
TCONS_00029331 mRNA upstream 195350 29383486 ~ 29437109 (-) False XLOC_014863
TCONS_00029320 other downstream 744587 28441841 ~ 28441960 (-) True XLOC_014853
TCONS_00029305 other downstream 1580807 27589335 ~ 27605740 (-) True XLOC_014843
TCONS_00029303 other downstream 1601810 27581750 ~ 27584737 (-) True XLOC_014841
TCONS_00029297 other downstream 1611453 27571706 ~ 27575094 (-) True XLOC_014839
TCONS_00029289 other downstream 1718032 27468449 ~ 27468515 (-) True XLOC_014836
TCONS_00029333 other upstream 596959 29785095 ~ 29785212 (-) True XLOC_014865
TCONS_00029339 other upstream 673723 29861859 ~ 29873115 (-) False XLOC_014868
TCONS_00029343 other upstream 1161167 30349303 ~ 30350198 (-) False XLOC_014872
TCONS_00029352 other upstream 1241196 30429332 ~ 30431750 (-) False XLOC_014875
TCONS_00029367 other upstream 1564673 30752809 ~ 30799963 (-) True XLOC_014881

Expression Profile


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