RNA id: TU289342



Basic Information


Item Value
RNA id TU289342
length 252
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G253906
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 38138956 ~ 38139207 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cctttagggagggggtcagagacctggctgtgtggtgccaggacaacaagctctccctcaactagatcaagacaaaggagatgattgtggattacaggaaaaagaggaccgagcacttCCCCATTCTCATctacggggctgcagtggagcaggttgagagcttcaagttccttggtatccacatcaccaacaaactaacatggcccaagctagaggtcgaccgattaaacggaatgaccgattaattagggc

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU289322 lncRNA downstream 9977 38128777 ~ 38128979 (-) True G253886
TU289320 lncRNA downstream 11082 38127664 ~ 38127874 (-) True G253884
TU289299 lncRNA downstream 31216 38107335 ~ 38107740 (-) True G253863
TU289270 lncRNA downstream 46161 38092403 ~ 38092795 (-) True G253836
TU289246 lncRNA downstream 59782 38078925 ~ 38079174 (-) True G253812
TU289344 lncRNA upstream 845 38140052 ~ 38140274 (-) True G253908
TU289345 lncRNA upstream 1292 38140499 ~ 38140957 (-) True G253909
TU289346 lncRNA upstream 2103 38141310 ~ 38141547 (-) True G253910
TU289352 lncRNA upstream 5809 38145016 ~ 38145225 (-) True G253916
TU289385 lncRNA upstream 25437 38164644 ~ 38164965 (-) True G253949
XM_036974000.1 mRNA downstream 76200 37814709 ~ 38062756 (-) False LOC110519943
XM_036974001.1 mRNA downstream 76200 37814709 ~ 38062756 (-) False LOC110519943
XM_036974002.1 mRNA downstream 76200 37814709 ~ 38062756 (-) False LOC110519943
XM_036974003.1 mRNA downstream 76200 37814709 ~ 38062756 (-) True LOC110519943
XR_005039852.1 mRNA downstream 446951 37688775 ~ 37692005 (-) False LOC118944514
XM_021596836.2 mRNA upstream 124591 38263798 ~ 38401288 (-) False LOC110519945
LOC110519947 mRNA upstream 637731 38776938 ~ 38778156 (-) False LOC110519947
XM_036974019.1 mRNA upstream 656486 38795693 ~ 39140087 (-) False LOC110519948
XM_036974061.1 mRNA upstream 656486 38795693 ~ 39140087 (-) False LOC110519948
XM_036974062.1 mRNA upstream 656486 38795693 ~ 39140087 (-) False LOC110519948
TU287636 other downstream 1405516 36731845 ~ 36733440 (-) True gpatch3
TU286962 other downstream 1780985 36357483 ~ 36357971 (-) True G251681
TU286719 other downstream 1994384 36140112 ~ 36144572 (-) True G251462
TU285142 other downstream 3242660 34895958 ~ 34896296 (-) True G249990
TU285130 other downstream 3249002 34889506 ~ 34889954 (-) True G249978
TU291417 other upstream 1260054 39399261 ~ 39508702 (-) True LOC110519955
TU291595 other upstream 1505364 39644571 ~ 39645743 (-) True G255911
TU291727 other upstream 1679441 39818648 ~ 39818980 (-) True G256016
TU292346 other upstream 2183299 40322506 ~ 40322898 (-) True G256616
TU292362 other upstream 2196003 40335210 ~ 40335440 (-) True G256632

Expression Profile


TU289342 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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TU289342 Expression in each Bioproject

Bar chart with 18 bars.
TU289342 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.