RNA id: TCONS_00030282


Basic Information

Item Value
RNA id TCONS_00030282
length 306
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id XLOC_014860
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 29202043 ~ 29271026 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCGGATACTGTTTAATGTTGCACTCAAGTTAGCGTGATTTGTATGAACTTTGCTTCACACGGACTGTAAATATGCAAGAGAGTGAGGTCCATCAGAGCAGAGACAGTGTCGTCAGAATGAACAGACGGACTGGTTCTTCTACAGATGTCCCTTATCTCAGCACGCGTGCACTAATGTATCAGCTCTGAGTCTGTCTGCTCTTTGTCTGCAAGAAAACAGCAGTGAATGGGCCAGGCGAGTTCTTTCTGGCTGAACTCAGACAACTGTCAAATAATTAATAAGTAAACAGGAAACATACTGTTTCAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029788 lncRNA downstream 66280 29186547 ~ 29188136 (-) True XLOC_014859
TCONS_00030279 lncRNA downstream 66409 29186529 ~ 29188007 (-) False XLOC_014859
TCONS_00030278 lncRNA downstream 66422 29186529 ~ 29187994 (-) False XLOC_014859
TCONS_00030277 lncRNA downstream 132191 29103407 ~ 29122225 (-) True XLOC_014858
TCONS_00030276 lncRNA downstream 143522 29103407 ~ 29110894 (-) False XLOC_014858
TCONS_00030283 lncRNA upstream 479302 29750328 ~ 29751667 (-) False XLOC_014864
TCONS_00030284 lncRNA upstream 479302 29750328 ~ 29754368 (-) False XLOC_014864
TCONS_00030285 lncRNA upstream 479302 29750328 ~ 29796288 (-) True XLOC_014864
TCONS_00029335 lncRNA upstream 551478 29822504 ~ 29832819 (-) False XLOC_014866
TCONS_00029336 lncRNA upstream 558959 29829985 ~ 29832818 (-) True XLOC_014866
TCONS_00029325 mRNA downstream 465007 28786149 ~ 28789409 (-) True XLOC_014854
TCONS_00029324 mRNA downstream 465950 28734048 ~ 28788466 (-) False XLOC_014854
TCONS_00029319 mRNA downstream 887003 28356753 ~ 28367413 (-) True XLOC_014852
TCONS_00029318 mRNA downstream 894383 28356753 ~ 28360033 (-) False XLOC_014852
TCONS_00029317 mRNA downstream 970572 28281537 ~ 28283844 (-) True XLOC_014851
TCONS_00029327 mRNA upstream 3359 29274385 ~ 29294457 (-) False XLOC_014861
TCONS_00029328 mRNA upstream 19295 29290321 ~ 29294457 (-) True XLOC_014861
TCONS_00029329 mRNA upstream 25165 29296191 ~ 29303788 (-) False XLOC_014862
TCONS_00029330 mRNA upstream 26376 29297402 ~ 29302249 (-) True XLOC_014862
TCONS_00029331 mRNA upstream 112460 29383486 ~ 29437109 (-) False XLOC_014863
TCONS_00029320 other downstream 812456 28441841 ~ 28441960 (-) True XLOC_014853
TCONS_00029305 other downstream 1648676 27589335 ~ 27605740 (-) True XLOC_014843
TCONS_00029303 other downstream 1669679 27581750 ~ 27584737 (-) True XLOC_014841
TCONS_00029297 other downstream 1679322 27571706 ~ 27575094 (-) True XLOC_014839
TCONS_00029289 other downstream 1785901 27468449 ~ 27468515 (-) True XLOC_014836
TCONS_00029333 other upstream 514069 29785095 ~ 29785212 (-) True XLOC_014865
TCONS_00029339 other upstream 590833 29861859 ~ 29873115 (-) False XLOC_014868
TCONS_00029343 other upstream 1078277 30349303 ~ 30350198 (-) False XLOC_014872
TCONS_00029352 other upstream 1158306 30429332 ~ 30431750 (-) False XLOC_014875
TCONS_00029367 other upstream 1481783 30752809 ~ 30799963 (-) True XLOC_014881

Expression Profile

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