RNA id: TU289581



Basic Information


Item Value
RNA id TU289581
length 233
lncRNA type intronic
GC content 0.30
exon number 1
gene id G254138
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 38350931 ~ 38351163 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aaaaactcttTCTGATTGGCTAAAGCATCTGCCACATCTTTCTAACTAATCCAGATAAGATTTTAAATATGTCAAACAGTATTTTCTGTGCATGTTTGTCATAATATGTTAGGTTGTTCCCATCCATTCTGGAGTGTTCGATATAATGCTTTCagggaaatgtattttttttcataTTTAATTACATGTAAGTGAATTATTACAGACAACCTACAAAATAATCTTACAGTATT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU289580 lncRNA upstream 624 38350089 ~ 38350307 (+) True G254137
TU289579 lncRNA upstream 1093 38349610 ~ 38349838 (+) True G254136
TU289578 lncRNA upstream 1517 38349188 ~ 38349414 (+) True G254135
TU289576 lncRNA upstream 2875 38347768 ~ 38348056 (+) True G254133
TU289575 lncRNA upstream 3759 38346910 ~ 38347172 (+) True G254132
TU289584 lncRNA downstream 5716 38356879 ~ 38357097 (+) True G254141
TU289587 lncRNA downstream 8163 38359326 ~ 38359548 (+) True G254144
TU289589 lncRNA downstream 10515 38361678 ~ 38361914 (+) True G254146
TU289591 lncRNA downstream 14095 38365258 ~ 38365461 (+) True G254148
TU289663 lncRNA downstream 112193 38463356 ~ 38463788 (+) True G254219
XM_021596833.2 mRNA upstream 100909 38234343 ~ 38250022 (+) False LOC110519944
XM_021596834.2 mRNA upstream 100909 38234343 ~ 38250022 (+) False LOC110519944
XM_021596835.2 mRNA upstream 100909 38234343 ~ 38250022 (+) True LOC110519944
XM_021596828.2 mRNA upstream 595479 37748695 ~ 37755452 (+) False LOC110519942
XM_021596827.2 mRNA upstream 659033 37688788 ~ 37691898 (+) True si:ch211-184m13.4
XM_036974005.1 mRNA downstream 284783 38635946 ~ 38760490 (+) False LOC110519946
XM_036974016.1 mRNA downstream 295133 38646296 ~ 38760490 (+) False LOC110519946
XM_036974006.1 mRNA downstream 295134 38646297 ~ 38760490 (+) False LOC110519946
XM_036974017.1 mRNA downstream 295134 38646297 ~ 38760490 (+) False LOC110519946
XM_036974007.1 mRNA downstream 295135 38646298 ~ 38760490 (+) False LOC110519946
TU289268 other upstream 258197 38092322 ~ 38092734 (+) True G253834
TU288722 other upstream 623593 37726948 ~ 37727338 (+) True G253299
TU287145 other upstream 1723389 36623610 ~ 36627542 (+) True G251845
TU287065 other upstream 1825758 36511574 ~ 36525173 (+) True G251773
TU285526 other upstream 3129559 35219832 ~ 35221372 (+) True LOC110519579
TU289648 other downstream 90003 38441166 ~ 38441734 (+) True G254204
TU289899 other downstream 249324 38600487 ~ 38600866 (+) True G254445
TU290310 other downstream 492347 38843510 ~ 38844556 (+) True G254816
TU290915 other downstream 1307896 39659059 ~ 39668088 (+) True LOC110519960
TU292451 other downstream 2088906 40440069 ~ 40452180 (+) False LOC110519969

Expression Profile