RNA id: TU289589


Basic Information

Item Value
RNA id TU289589
length 237
lncRNA type intronic
GC content 0.57
exon number 1
gene id G254146
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 38361678 ~ 38361914 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catcattgtcggtaatcaggcctaccactgttgtgtcgttgggaatacttaatgatggtgttggagtcgtgcttggccatgcaggcATGGGTGACCATGGAGtcacaggagggaactgagcacgcacccctgaggggcccctgtgttgaggatcagcgtggcagttgtgttgttgcctacccttaccacctgggggcggcccgtcaggaagtccatgatccagttgcagaggaaggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU289587 lncRNA upstream 2130 38359326 ~ 38359548 (+) True G254144
TU289584 lncRNA upstream 4581 38356879 ~ 38357097 (+) True G254141
TU289581 lncRNA upstream 10515 38350931 ~ 38351163 (+) True G254138
TU289580 lncRNA upstream 11371 38350089 ~ 38350307 (+) True G254137
TU289579 lncRNA upstream 11840 38349610 ~ 38349838 (+) True G254136
TU289591 lncRNA downstream 3344 38365258 ~ 38365461 (+) True G254148
TU289663 lncRNA downstream 101442 38463356 ~ 38463788 (+) True G254219
TU289792 lncRNA downstream 103705 38465619 ~ 38465892 (+) True G254343
TU289901 lncRNA downstream 240444 38602358 ~ 38602616 (+) True G254447
TU290019 lncRNA downstream 250713 38612627 ~ 38612843 (+) True G254562
XM_021596833.2 mRNA upstream 111656 38234343 ~ 38250022 (+) False LOC110519944
XM_021596834.2 mRNA upstream 111656 38234343 ~ 38250022 (+) False LOC110519944
XM_021596835.2 mRNA upstream 111656 38234343 ~ 38250022 (+) True LOC110519944
XM_021596828.2 mRNA upstream 606226 37748695 ~ 37755452 (+) False LOC110519942
XM_021596827.2 mRNA upstream 669780 37688788 ~ 37691898 (+) True si:ch211-184m13.4
XM_036974005.1 mRNA downstream 274032 38635946 ~ 38760490 (+) False LOC110519946
XM_036974016.1 mRNA downstream 284382 38646296 ~ 38760490 (+) False LOC110519946
XM_036974006.1 mRNA downstream 284383 38646297 ~ 38760490 (+) False LOC110519946
XM_036974017.1 mRNA downstream 284383 38646297 ~ 38760490 (+) False LOC110519946
XM_036974007.1 mRNA downstream 284384 38646298 ~ 38760490 (+) False LOC110519946
TU289268 other upstream 268944 38092322 ~ 38092734 (+) True G253834
TU288722 other upstream 634340 37726948 ~ 37727338 (+) True G253299
TU287145 other upstream 1734136 36623610 ~ 36627542 (+) True G251845
TU287065 other upstream 1836505 36511574 ~ 36525173 (+) True G251773
TU285526 other upstream 3140306 35219832 ~ 35221372 (+) True LOC110519579
TU289648 other downstream 79252 38441166 ~ 38441734 (+) True G254204
TU289899 other downstream 238573 38600487 ~ 38600866 (+) True G254445
TU290310 other downstream 481596 38843510 ~ 38844556 (+) True G254816
TU290915 other downstream 1297145 39659059 ~ 39668088 (+) True LOC110519960
TU292451 other downstream 2078155 40440069 ~ 40452180 (+) False LOC110519969

Expression Profile