RNA id: TU289775


Basic Information

Item Value
RNA id TU289775
length 334
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G254326
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 38437543 ~ 38437876 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcatatacacatggttagcagatgttaatgcgagtgtagcgaaatgcttgtgcttctagttccgacaatgcagtaataactaacgagtaatctagctaacaattccaaaactactaccttatacacacaagtgtaaagggaaaaagaatatgtacataaagatatatgaatgagtgatggtacagagcggcataggcaagatgcagtagatggtatcgagtacagtatatacatatgagatgggtatgtaaacaaagtggcatagtttaaagtggctagtgatacatgtattacataaagatgcagtagatgatatagaatacagtatatacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU289721 lncRNA downstream 97817 38339469 ~ 38339726 (-) True G254275
TU289674 lncRNA downstream 168331 38263833 ~ 38269212 (-) False LOC110519945
TU289675 lncRNA downstream 168331 38263833 ~ 38269212 (-) True LOC110519945
TU289445 lncRNA downstream 230735 38206590 ~ 38206808 (-) True G254009
TU289408 lncRNA downstream 258300 38178992 ~ 38179243 (-) True G253972
TU289784 lncRNA upstream 15705 38453581 ~ 38453908 (-) True G254335
TU290010 lncRNA upstream 162206 38600082 ~ 38600376 (-) True G254553
TU290011 lncRNA upstream 163274 38601150 ~ 38601415 (-) True G254554
TU290013 lncRNA upstream 165795 38603671 ~ 38603983 (-) True G254556
TU290014 lncRNA upstream 166947 38604823 ~ 38605227 (-) True G254557
XM_021596836.2 mRNA downstream 36255 38263798 ~ 38401288 (-) False LOC110519945
XM_036974000.1 mRNA downstream 374787 37814709 ~ 38062756 (-) False LOC110519943
XM_036974001.1 mRNA downstream 374787 37814709 ~ 38062756 (-) False LOC110519943
XM_036974002.1 mRNA downstream 374787 37814709 ~ 38062756 (-) False LOC110519943
XM_036974003.1 mRNA downstream 374787 37814709 ~ 38062756 (-) True LOC110519943
LOC110519947 mRNA upstream 339062 38776938 ~ 38778156 (-) False LOC110519947
XM_036974019.1 mRNA upstream 357817 38795693 ~ 39140087 (-) False LOC110519948
XM_036974061.1 mRNA upstream 357817 38795693 ~ 39140087 (-) False LOC110519948
XM_036974062.1 mRNA upstream 357817 38795693 ~ 39140087 (-) False LOC110519948
XM_036974063.1 mRNA upstream 357817 38795693 ~ 39140087 (-) False LOC110519948
TU287636 other downstream 1704103 36731845 ~ 36733440 (-) True gpatch3
TU286962 other downstream 2079572 36357483 ~ 36357971 (-) True G251681
TU286719 other downstream 2292971 36140112 ~ 36144572 (-) True G251462
TU285142 other downstream 3541247 34895958 ~ 34896296 (-) True G249990
TU285130 other downstream 3547589 34889506 ~ 34889954 (-) True G249978
TU291417 other upstream 961385 39399261 ~ 39508702 (-) True LOC110519955
TU291595 other upstream 1206695 39644571 ~ 39645743 (-) True G255911
TU291727 other upstream 1380772 39818648 ~ 39818980 (-) True G256016
TU292346 other upstream 1884630 40322506 ~ 40322898 (-) True G256616
TU292362 other upstream 1897334 40335210 ~ 40335440 (-) True G256632

Expression Profile