RNA id: TU290217


Basic Information

Item Value
RNA id TU290217
length 785
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G254730
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 38754938 ~ 38755884 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTTTCTGGCTCTCTGTATCTCATGGCGTTTAGGATGTTTCTCCTCTCCAACTCCAGTTCTGACGCAGCCCGGAGACTCTGGGCCTTTTTGTCTGTTTTACGTCTCAACTCCTCCTCCAGTAACCTCTGGGCCATGCCCCCAGAGCTGCCGTACCAGCCTGGGCACACACTCACTGACATACagttacttacacacacacacacacacacacacacacacacacacacacacacacctccccttgCTAATTTGAGCAGCTAAGTAATGGTTCAACTTCCACCGAAGGTCAATAAGGATGATCTACTATTGATGAATACATGAGGACATTAGTAAATCCCCACTGACCTTTAGTTTTCTCCACGTTGTCCAGCTCTGGAGTAGATTTCGACTTTGCCCTGCCAatcacaacaaaacacatttaGGGGCTGATAATTAAGAAAATTCATTATCTCTCAAATCAATGTACACTGTAAAACACATTATTGATTTTACTAGTCTACGTGgtaccaaatggtaccctattccctacaaagtgtACTACTACATTTGATCAGGGCCCTTGGGGCTCTTTGTATTTTCAAATGCGTACAGTTCAATACatggacacatacagtacatgagtGGCCTGCAATGGAAATAAGCCTTCCGGCTTTGTTGCATAATCTCTATGATACCACTTTTTtactttacagtgcattcggaaaatattcaggccccttgactttttccatttttttttgttacgttacagccttattctaaaatggattaaatgttatGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU290216 lncRNA downstream 2982 38751592 ~ 38751956 (-) True G254729
TU290210 lncRNA downstream 17771 38734820 ~ 38737167 (-) True G254723
TU290014 lncRNA downstream 149711 38604823 ~ 38605227 (-) True G254557
TU290013 lncRNA downstream 150955 38603671 ~ 38603983 (-) True G254556
TU290011 lncRNA downstream 153523 38601150 ~ 38601415 (-) True G254554
TU290223 lncRNA upstream 6079 38761963 ~ 38762193 (-) True G254734
TU290227 lncRNA upstream 9653 38765537 ~ 38765811 (-) True G254738
TU290228 lncRNA upstream 10379 38766263 ~ 38766518 (-) True G254739
TU290229 lncRNA upstream 11324 38767208 ~ 38767536 (-) True G254740
TU290231 lncRNA upstream 12202 38768086 ~ 38768473 (-) True G254742
XM_021596836.2 mRNA downstream 353650 38263798 ~ 38401288 (-) False LOC110519945
XM_036974000.1 mRNA downstream 692182 37814709 ~ 38062756 (-) False LOC110519943
LOC110519947 mRNA upstream 21054 38776938 ~ 38778156 (-) False LOC110519947
XM_036974019.1 mRNA upstream 39809 38795693 ~ 39140087 (-) False LOC110519948
XM_036974061.1 mRNA upstream 39809 38795693 ~ 39140087 (-) False LOC110519948
XM_036974062.1 mRNA upstream 39809 38795693 ~ 39140087 (-) False LOC110519948
XM_036974063.1 mRNA upstream 39809 38795693 ~ 39140087 (-) False LOC110519948
TU287636 other downstream 2021498 36731845 ~ 36733440 (-) True gpatch3
TU286962 other downstream 2396967 36357483 ~ 36357971 (-) True G251681
TU286719 other downstream 2610366 36140112 ~ 36144572 (-) True G251462
TU285142 other downstream 3858642 34895958 ~ 34896296 (-) True G249990
TU285130 other downstream 3864984 34889506 ~ 34889954 (-) True G249978
TU291417 other upstream 643377 39399261 ~ 39508702 (-) True LOC110519955
TU291595 other upstream 888687 39644571 ~ 39645743 (-) True G255911
TU291727 other upstream 1062764 39818648 ~ 39818980 (-) True G256016
TU292346 other upstream 1566622 40322506 ~ 40322898 (-) True G256616
TU292362 other upstream 1579326 40335210 ~ 40335440 (-) True G256632

Expression Profile