RNA id: TU290238


Basic Information

Item Value
RNA id TU290238
length 989
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G254749
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 38772210 ~ 38773198 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtagaaaatagtaaaaataaagaaaaatccttgaatgagtaggtgtgtccaaccttttgactgatATTTTTAGACATTTGTGACCAACCGGCTTGagtcggtcttatgtagcaaaattagaaattgtgtttttacattggataaaagtagagactcagagctacaaaattgtatatcatacactacagtttaggaacaatgggaaagtaattctgctttgaaagttgataaactttcCACTTTCGTGGAAATGgcctttgaatattttggtacacctactggagagctctcctttgtcaaCATCCATTCAGCATCGTTTACACCCTCTAAAGCTTTTAGCCCAGCCCATCTCTTTAAAGCTTTCAGaatgcacactggacgctctggccgaggagtagggtggATCAAAGCGTTCTGTcataacaacagcagtcaagcacccaagctaactggctaacattggctagcttgctaattacttccagacacaaatgagagaacagctcacccTGACCactttactcgccctagcagaccttgttaggctgtttttatgttatccagaccGTTGGGGACTGCACCAACAAATGACActttttttgccaatgtttactgacactggcaaTATTCAATAGGTGTTGAGCATTtgtaaatttgtcagttattctgctctctggcaagctcagacaagagtgctctgaaatcggagtagatagccagagcaaatttaccagctatttctatcaacagttgttgcagtgacatcattaacattctattgaaatggttagtagcatagtggagtcttttgttaaaacatgtagctagctagctaaaagattaaccataatcccaactcatgatatTACTACCCTGCGTGAATTTGCAGGTatctaaccaaccatgttcaatattagctagctaacattgggcTTTAACAAGCAATTGCTCTgagattcaaataatattactacacagatcatacatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU290237 lncRNA downstream 118 38771814 ~ 38772092 (-) True G254748
TU290236 lncRNA downstream 477 38771348 ~ 38771733 (-) True G254747
TU290234 lncRNA downstream 2617 38769300 ~ 38769593 (-) True G254745
TU290231 lncRNA downstream 3737 38768086 ~ 38768473 (-) True G254742
TU290229 lncRNA downstream 4674 38767208 ~ 38767536 (-) True G254740
TU290239 lncRNA upstream 44 38773242 ~ 38773478 (-) True G254750
TU290243 lncRNA upstream 1622 38774820 ~ 38775116 (-) True G254754
TU290244 lncRNA upstream 1966 38775164 ~ 38775454 (-) True G254755
TU290245 lncRNA upstream 2331 38775529 ~ 38775786 (-) True G254756
TU290250 lncRNA upstream 3654 38776852 ~ 38778052 (-) False LOC110519947
XM_021596836.2 mRNA downstream 370922 38263798 ~ 38401288 (-) False LOC110519945
XM_036974000.1 mRNA downstream 709454 37814709 ~ 38062756 (-) False LOC110519943
LOC110519947 mRNA upstream 3740 38776938 ~ 38778156 (-) False LOC110519947
XM_036974019.1 mRNA upstream 22495 38795693 ~ 39140087 (-) False LOC110519948
XM_036974061.1 mRNA upstream 22495 38795693 ~ 39140087 (-) False LOC110519948
XM_036974062.1 mRNA upstream 22495 38795693 ~ 39140087 (-) False LOC110519948
XM_036974063.1 mRNA upstream 22495 38795693 ~ 39140087 (-) False LOC110519948
TU287636 other downstream 2038770 36731845 ~ 36733440 (-) True gpatch3
TU286962 other downstream 2414239 36357483 ~ 36357971 (-) True G251681
TU286719 other downstream 2627638 36140112 ~ 36144572 (-) True G251462
TU285142 other downstream 3875914 34895958 ~ 34896296 (-) True G249990
TU285130 other downstream 3882256 34889506 ~ 34889954 (-) True G249978
TU291417 other upstream 626063 39399261 ~ 39508702 (-) True LOC110519955
TU291595 other upstream 871373 39644571 ~ 39645743 (-) True G255911
TU291727 other upstream 1045450 39818648 ~ 39818980 (-) True G256016
TU292346 other upstream 1549308 40322506 ~ 40322898 (-) True G256616
TU292362 other upstream 1562012 40335210 ~ 40335440 (-) True G256632

Expression Profile