RNA id: TU290239



Basic Information


Item Value
RNA id TU290239
length 237
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G254750
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 38773242 ~ 38773478 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATCtccactgtatgtttgttagctagccacccagttttagaggaatgattccATAAACTTTTGAATTTAAATGCCATTATGCCAGCGTTACTTTCAAACAGTCAAtcaatccacagccatacactggctgaaatcagttgatgataggacATAGTTGTAAATGTTacaagtactgatattgtatcatatatTGGTGATATATTGGTtatattggttactacatgattacattatgtg

Function


GO: NA

KEGG: NA

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU290238 lncRNA downstream 44 38772210 ~ 38773198 (-) True G254749
TU290237 lncRNA downstream 1150 38771814 ~ 38772092 (-) True G254748
TU290236 lncRNA downstream 1509 38771348 ~ 38771733 (-) True G254747
TU290234 lncRNA downstream 3649 38769300 ~ 38769593 (-) True G254745
TU290231 lncRNA downstream 4769 38768086 ~ 38768473 (-) True G254742
TU290243 lncRNA upstream 1342 38774820 ~ 38775116 (-) True G254754
TU290244 lncRNA upstream 1686 38775164 ~ 38775454 (-) True G254755
TU290245 lncRNA upstream 2051 38775529 ~ 38775786 (-) True G254756
TU290250 lncRNA upstream 3374 38776852 ~ 38778052 (-) False LOC110519947
TU290246 lncRNA upstream 3456 38776934 ~ 38778052 (-) False LOC110519947
XM_021596836.2 mRNA downstream 371954 38263798 ~ 38401288 (-) False LOC110519945
XM_036974000.1 mRNA downstream 710486 37814709 ~ 38062756 (-) False LOC110519943
LOC110519947 mRNA upstream 3460 38776938 ~ 38778156 (-) False LOC110519947
XM_036974019.1 mRNA upstream 22215 38795693 ~ 39140087 (-) False LOC110519948
XM_036974061.1 mRNA upstream 22215 38795693 ~ 39140087 (-) False LOC110519948
XM_036974062.1 mRNA upstream 22215 38795693 ~ 39140087 (-) False LOC110519948
XM_036974063.1 mRNA upstream 22215 38795693 ~ 39140087 (-) False LOC110519948
TU287636 other downstream 2039802 36731845 ~ 36733440 (-) True gpatch3
TU286962 other downstream 2415271 36357483 ~ 36357971 (-) True G251681
TU286719 other downstream 2628670 36140112 ~ 36144572 (-) True G251462
TU285142 other downstream 3876946 34895958 ~ 34896296 (-) True G249990
TU285130 other downstream 3883288 34889506 ~ 34889954 (-) True G249978
TU291417 other upstream 625783 39399261 ~ 39508702 (-) True LOC110519955
TU291595 other upstream 871093 39644571 ~ 39645743 (-) True G255911
TU291727 other upstream 1045170 39818648 ~ 39818980 (-) True G256016
TU292346 other upstream 1549028 40322506 ~ 40322898 (-) True G256616
TU292362 other upstream 1561732 40335210 ~ 40335440 (-) True G256632

Expression Profile


TU290239 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 2.
End of interactive chart.

TU290239 Expression in each Bioproject

Bar chart with 7 bars.
TU290239 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 14.
End of interactive chart.