RNA id: TCONS_00029331


Basic Information

Item Value
RNA id TCONS_00029331
length 1394
RNA type mRNA
GC content 0.49
exon number 7
gene id XLOC_014863
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 29383486 ~ 29437109 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATGCCGTCCAATGGGCTCACGCAGTCCTCTCATGTCGACTTTCTGCGGCAAGTACAGAGTTTAGAACCAGGGCTGTTCTGGACTGATGCGGGAATAAAGACTGCAACCAGTCGTGAATGTTAAACACACAGACGCCGACTAATAAGTTTCAAAAATCTTGCGAGTAAATGGGATTCAACGTCTTCCGGACAGAATGTAAAGAATTCCTTGAAGGATGTGGGGAATTAAAGGCTCGTTCGCTGTGCTGTTATTGCTGTTTTTGGCTTATATCTTCGCGTCCTCGGTTAACGCCGACAGTTTATCAGCTCCGCTCAATGTGACCATCAAAGCACTGGAGGGGAACTCAGCGATTGTGACATGGGACATTCTGGAGGGAGACCCAGTCATTGGGTTTGCCATCACCCAGCAGAAGAAGGACGTGCGCATGCTGCGATTCATCCAGGAAGTGAACCTGTCCTGTTCCGCACACCCAAAGAGTCAGAGAAACTGGCCTCTAAAAGCCCAGATGAAGTGACCATGGAGGAGGTCGGCCAGGCGGCTCAGCTCAGGGCTGGAGAGCTCATTATCATTGTGGTGGTTCTCGTCATGTGGGCAGGTGTGATCGCTCTGTTCTGCCGCCAGTATGACATCATCAAAGACAACGAGCCCAACAATAACAAGGACAAAGCCAAGAACTCTTCAGAGTGCAGTACCCCAGAGCACCCTACAGGGGGACTACTGCGCAGCAAGGTCTAATTACGCCTTCCCCTGTCGGCAATAATAGGCTTCAGCCTCAGGACAGTGCTCCGAGACAAAACAAGTAAGCCATCAATTCACAGTTGTGAAGCCCACCGCTCATCCTCGACCAAAACAACCTTTTAAGTATTCCCATCGATCAACATCAACTCTTTGGTGCTTGTCAGTTTGGGACATTGACACAAACTTAAGGACGAAAAATGGACAGGACGGTTCCGAAAACTGCAACGCTGGAAGTTTCAGCtgtttaaagagagagagagtcgcTGAGCTTCGATGTACAAGACTCGAAACCGGCTGTGAGCTGGAAGAGCAGAGACGCCGAGCCACCAGGAGTGTTCCTATTTGACACACAGAGATAAGGAGAAAACCAACCTGCCTCCCCAAATAAACCAGAACCGTGTGCTGTGTAAGAGAAAGGATAAGTGTTTTTTTCCAAACTCACCGCCATTATCAGCGCTGTTCCAGCATCAGGTCTCAGACTTCACCATCTCTCAACGTTTGTTCTCCGATTCTTCTCTTCACACCTCCAGTTGCTTTCAATCCTCCATTATCCTCCCTCCAGCAGCCAATCACGGACCCTCTAGATCATTTGATGTGGTTTAATTGGTGCAGTTGGATCTTTCTTCTCAGCACTCTTGCTCTCAGGGcattcagg

Function

GO:

id name namespace
GO:0005777 peroxisome cellular_component
GO:0005778 peroxisomal membrane cellular_component
GO:0005576 extracellular region cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005179 hormone activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-916 Predicted to enable hormone activity. Predicted to be located in peroxisomal membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular region and plasma membrane. Is expressed in heart and muscle. Orthologous to human FNDC5 (fibronectin type III domain containing 5).

Ensembl:

ensembl_id ENSDART00000074497

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030280 lncRNA downstream 112460 29202043 ~ 29271026 (-) False XLOC_014860
TCONS_00030281 lncRNA downstream 112460 29235706 ~ 29271026 (-) False XLOC_014860
TCONS_00030282 lncRNA downstream 112460 29254416 ~ 29271026 (-) True XLOC_014860
TCONS_00029788 lncRNA downstream 195350 29186547 ~ 29188136 (-) True XLOC_014859
TCONS_00030279 lncRNA downstream 195479 29186529 ~ 29188007 (-) False XLOC_014859
TCONS_00030283 lncRNA upstream 313219 29750328 ~ 29751667 (-) False XLOC_014864
TCONS_00030284 lncRNA upstream 313219 29750328 ~ 29754368 (-) False XLOC_014864
TCONS_00030285 lncRNA upstream 313219 29750328 ~ 29796288 (-) True XLOC_014864
TCONS_00029335 lncRNA upstream 385395 29822504 ~ 29832819 (-) False XLOC_014866
TCONS_00029336 lncRNA upstream 392876 29829985 ~ 29832818 (-) True XLOC_014866
TCONS_00029329 mRNA downstream 79698 29296191 ~ 29303788 (-) False XLOC_014862
TCONS_00029330 mRNA downstream 81237 29297402 ~ 29302249 (-) True XLOC_014862
TCONS_00029327 mRNA downstream 89029 29274385 ~ 29294457 (-) False XLOC_014861
TCONS_00029328 mRNA downstream 89029 29290321 ~ 29294457 (-) True XLOC_014861
TCONS_00029325 mRNA downstream 594077 28786149 ~ 28789409 (-) True XLOC_014854
TCONS_00029334 mRNA upstream 385391 29822500 ~ 29832876 (-) False XLOC_014866
TCONS_00029337 mRNA upstream 397331 29834440 ~ 29853435 (-) False XLOC_014867
TCONS_00029338 mRNA upstream 399349 29836458 ~ 29853402 (-) True XLOC_014867
TCONS_00029340 mRNA upstream 429380 29866489 ~ 29887629 (-) True XLOC_014868
TCONS_00029344 mRNA upstream 913479 30350588 ~ 30359059 (-) True XLOC_014872
TCONS_00029320 other downstream 941526 28441841 ~ 28441960 (-) True XLOC_014853
TCONS_00029305 other downstream 1777746 27589335 ~ 27605740 (-) True XLOC_014843
TCONS_00029303 other downstream 1798749 27581750 ~ 27584737 (-) True XLOC_014841
TCONS_00029297 other downstream 1808392 27571706 ~ 27575094 (-) True XLOC_014839
TCONS_00029289 other downstream 1914971 27468449 ~ 27468515 (-) True XLOC_014836
TCONS_00029333 other upstream 347986 29785095 ~ 29785212 (-) True XLOC_014865
TCONS_00029339 other upstream 424750 29861859 ~ 29873115 (-) False XLOC_014868
TCONS_00029343 other upstream 912194 30349303 ~ 30350198 (-) False XLOC_014872
TCONS_00029352 other upstream 992223 30429332 ~ 30431750 (-) False XLOC_014875
TCONS_00029367 other upstream 1315700 30752809 ~ 30799963 (-) True XLOC_014881

Expression Profile

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