RNA id: TU291281


Basic Information

Item Value
RNA id TU291281
length 719
lncRNA type intronic
GC content 0.38
exon number 1
gene id G255643
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 39172885 ~ 39173603 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tggaacttgttcagtatatgtctcagttgttgaatcttgttatgttcatacagatatttacacatgttaagttttctgaaaataaacgcagttgacagtgagaggacgtttcttttttcgCTGAGTTTATTTGGTTAGTATAGACTGAGTTTTTTCCACCCCACTTTAGCTAAGACATGTACAAAAAGTTCTCTACCAagccaaaatcaaatcaaatgttattggacacatgcacatatttagcatatgttattgcgggtgtagcgaaatgcttgtatccCATGCAAAGTCTACTACATTAAATTGCATTGGGGGCTATGGAGGGGCAGAGTGAAAAGCCAGCAGCAGTCTGTGTGACAAAGTCCCCCTCAAAAACGAACCATTTTTGGTTTGTAGAGACCCTACCGAGTATTTCACATCACACTTTAGCTGAGACAGGTTGAAAAGTTCTCTCTACAAGCCAATATATATCCCaagtactgtctctattgcaATGTATTTTATTGAGGGCTATGGATGGGGTGGAGAACGGAGTGCTGCTGGATATGTATGACACAGTACCCCTCCAAAAGTACACACATTTGGTTATTagagaccctactgagtattttCCACcccacttttgtttattattattggtcttaaaaaatatatacatattctaCAATATTTACTGATTGCCTTTACTTGTTGGCACAGTGCAATTGGCCactgattaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU291280 lncRNA downstream 123 39172112 ~ 39172762 (-) True G255642
TU291273 lncRNA downstream 8002 39164459 ~ 39164883 (-) True G255635
TU291138 lncRNA downstream 386125 38786440 ~ 38786760 (-) True G255504
TU291137 lncRNA downstream 388472 38784203 ~ 38784413 (-) True G255503
TU291131 lncRNA downstream 393851 38778768 ~ 38779034 (-) True G255497
TU291282 lncRNA upstream 4623 39178226 ~ 39178621 (-) True G255644
TU291283 lncRNA upstream 6489 39180092 ~ 39180324 (-) True G255645
TU291284 lncRNA upstream 7563 39181166 ~ 39181413 (-) True G255646
TU291289 lncRNA upstream 14764 39188367 ~ 39188887 (-) True G255651
TU291308 lncRNA upstream 17160 39190763 ~ 39191090 (-) True G255660
XM_036974056.1 mRNA downstream 32798 38796958 ~ 39140087 (-) False LOC110519948
XR_005044896.1 mRNA upstream 58279 39231882 ~ 39252150 (-) False LOC110519952
XR_005044901.1 mRNA upstream 58279 39231882 ~ 39252150 (-) False LOC110519952
XR_005044907.1 mRNA upstream 58279 39231882 ~ 39252150 (-) False LOC110519952
XM_036974066.1 mRNA upstream 85188 39258791 ~ 39269170 (-) False LOC110519953
XM_036974065.1 mRNA upstream 85188 39258791 ~ 39269419 (-) False LOC110519953
TU287636 other downstream 2439445 36731845 ~ 36733440 (-) True gpatch3
TU286962 other downstream 2814914 36357483 ~ 36357971 (-) True G251681
TU286719 other downstream 3028313 36140112 ~ 36144572 (-) True G251462
TU285142 other downstream 4276589 34895958 ~ 34896296 (-) True G249990
TU285130 other downstream 4282931 34889506 ~ 34889954 (-) True G249978
TU291417 other upstream 225658 39399261 ~ 39508702 (-) True LOC110519955
TU291595 other upstream 470968 39644571 ~ 39645743 (-) True G255911
TU291727 other upstream 645045 39818648 ~ 39818980 (-) True G256016
TU292346 other upstream 1148903 40322506 ~ 40322898 (-) True G256616
TU292362 other upstream 1161607 40335210 ~ 40335440 (-) True G256632

Expression Profile