RNA id: TU291282


Basic Information

Item Value
RNA id TU291282
length 396
lncRNA type intronic
GC content 0.34
exon number 1
gene id G255644
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 39178226 ~ 39178621 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttaaacaatgctacctaatataatgtttacataccctacattattcatctcatatgtatatgtatatactgtactctatatcatctactgcatctttatgtaatacatgtatcactagccactttaactatgccactttgtttacatactcatctcatatgtatatactgtactcgatacaatctactgtatcttgcctatgccgctctgtaccatcactcattcatatatccttatgtacatattctttatccccttacacttgtgtgtataagacagttgttttggaattgttagttagattacttgttggttattactgcattgtcggaactagaagcacaagcatttcgctacactcgcattaacatctgctaaccatgtgtatgtgacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU291281 lncRNA downstream 4623 39172885 ~ 39173603 (-) True G255643
TU291280 lncRNA downstream 5464 39172112 ~ 39172762 (-) True G255642
TU291273 lncRNA downstream 13343 39164459 ~ 39164883 (-) True G255635
TU291138 lncRNA downstream 391466 38786440 ~ 38786760 (-) True G255504
TU291137 lncRNA downstream 393813 38784203 ~ 38784413 (-) True G255503
TU291283 lncRNA upstream 1471 39180092 ~ 39180324 (-) True G255645
TU291284 lncRNA upstream 2545 39181166 ~ 39181413 (-) True G255646
TU291289 lncRNA upstream 9746 39188367 ~ 39188887 (-) True G255651
TU291308 lncRNA upstream 12142 39190763 ~ 39191090 (-) True G255660
TU291310 lncRNA upstream 14431 39193052 ~ 39193272 (-) True G255662
XM_036974056.1 mRNA downstream 38139 38796958 ~ 39140087 (-) False LOC110519948
XR_005044896.1 mRNA upstream 53261 39231882 ~ 39252150 (-) False LOC110519952
XR_005044901.1 mRNA upstream 53261 39231882 ~ 39252150 (-) False LOC110519952
XR_005044907.1 mRNA upstream 53261 39231882 ~ 39252150 (-) False LOC110519952
XM_036974066.1 mRNA upstream 80170 39258791 ~ 39269170 (-) False LOC110519953
XM_036974065.1 mRNA upstream 80170 39258791 ~ 39269419 (-) False LOC110519953
TU287636 other downstream 2444786 36731845 ~ 36733440 (-) True gpatch3
TU286962 other downstream 2820255 36357483 ~ 36357971 (-) True G251681
TU286719 other downstream 3033654 36140112 ~ 36144572 (-) True G251462
TU285142 other downstream 4281930 34895958 ~ 34896296 (-) True G249990
TU285130 other downstream 4288272 34889506 ~ 34889954 (-) True G249978
TU291417 other upstream 220640 39399261 ~ 39508702 (-) True LOC110519955
TU291595 other upstream 465950 39644571 ~ 39645743 (-) True G255911
TU291727 other upstream 640027 39818648 ~ 39818980 (-) True G256016
TU292346 other upstream 1143885 40322506 ~ 40322898 (-) True G256616
TU292362 other upstream 1156589 40335210 ~ 40335440 (-) True G256632

Expression Profile