RNA id: TU290609


Basic Information

Item Value
RNA id TU290609
length 1295
lncRNA type intronic
GC content 0.42
exon number 1
gene id G255082
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 39188324 ~ 39189618 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acaaagcctccttcactcacgccgccaaacttaccctagtaaaactgactatcctaccgatcctcgactttggcgatgtcatctacaaaattgcttccaacactctactcagcaaactggatgcagtttatcacagtgccatccgttttgtcactaaagcaccttataccacccaccactgcgacttgtatgctctagtcggctggccctcgctacatattcgtcgccagacccactggctccaggtcatctacaagtccatgctaggtaaagctccgccttatctcagttcactggttacgatggcaacacccatccgtagcacgcgctccagcaggtgtatctcactgatcatccctaaagccaacacctcatttggccgcctttcgttccagttctctgttgcctgtgactggaacgaattgcaaaatcgctgaagttggagacttttatctccctcaccaacttcaaacatctgctatctgagcagctaaccgatcgctgcagctgtacatagtctattggtaaatagcccacccactttcacctacctcatccccatactgtttttatttatttatttttatttttctgctcttttgcacaccaatatctctacctgtacataaccatctgatcatttatcactccagtgttaatctgcataattgtaattatttgcctaccttctcatgccttttgcacacaatgtatatatagactccccttttttctactgtgttattgacttgttaattgtttactccatgtgtaactctgtgttgtctgttcacactgctatgccttatcttggccaggtcgcagttgcaaatgagaacttgttctcaactagcctacctggttaaataaaggtgaaataaaaaaaaaaataaaaaaagtttaatccaccagaaaataaataatacaacaaaCATTAAGGTAAACTATCTGGTCATtaaggtatatctcactggtcacccccaaagccaatacctcctttggtcgtctttccttccagttctctgctgccaatgactggaacgaactgcaaaaatctctgaagctggagactcatatctccctcactagctttaagcacctgCTGTCTGAGCAggtcacagatcactgcacctgtacataacccatctgtaaacagcccatctatctacctacctaatccccatacattatttatttatttatcttgctccttcgcaccccagtatctctacttgcaaattcatcttctgcacatctaccattccagtgtttcaattgctatattgtaattactt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU290593 lncRNA upstream 9307 39178196 ~ 39179017 (+) True G255076
TU290592 lncRNA upstream 10564 39177553 ~ 39177760 (+) True G255075
TU290374 lncRNA upstream 12158 39175765 ~ 39176166 (+) True G254874
TU290368 lncRNA upstream 15881 39172109 ~ 39172443 (+) True LOC110519950
TU290584 lncRNA upstream 25445 39162480 ~ 39162879 (+) True G255067
TU290610 lncRNA downstream 859 39190477 ~ 39190825 (+) True G255083
TU290611 lncRNA downstream 3184 39192802 ~ 39193030 (+) True G255084
TU290370 lncRNA downstream 66034 39255652 ~ 39256757 (+) True G254870
TU290643 lncRNA downstream 80000 39269618 ~ 39269965 (+) True G255115
TU290758 lncRNA downstream 218661 39408279 ~ 39410302 (+) True G255195
XM_036974012.1 mRNA upstream 427834 38646298 ~ 38760490 (+) False LOC110519946
trnaf-gaa mRNA downstream 204023 39393641 ~ 39393713 (+) True trnaf-gaa
XM_021596867.2 mRNA downstream 418551 39608169 ~ 39621078 (+) False LOC110519956
XM_021596866.2 mRNA downstream 418552 39608170 ~ 39621078 (+) True LOC110519956
XM_021596874.2 mRNA downstream 469135 39658753 ~ 39668297 (+) False LOC110519960
XM_021596883.2 mRNA downstream 516823 39706441 ~ 39709243 (+) False LOC110519963
TU290310 other upstream 343768 38843510 ~ 38844556 (+) True G254816
TU289899 other upstream 587458 38600487 ~ 38600866 (+) True G254445
TU289648 other upstream 746590 38441166 ~ 38441734 (+) True G254204
TU289268 other upstream 1095590 38092322 ~ 38092734 (+) True G253834
TU288722 other upstream 1460986 37726948 ~ 37727338 (+) True G253299
TU290915 other downstream 469441 39659059 ~ 39668088 (+) True LOC110519960
TU292451 other downstream 1250451 40440069 ~ 40452180 (+) False LOC110519969
TU292452 other downstream 1250451 40440069 ~ 40452180 (+) True LOC110519969
TU297744 other downstream 5062451 44252069 ~ 44252551 (+) True G261749
TU298041 other downstream 5330801 44520419 ~ 44525408 (+) True G262037

Expression Profile