RNA id: TU291424


Basic Information

Item Value
RNA id TU291424
length 2290
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G255751
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 39408086 ~ 39410397 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AgttggagtcggaagtttacatacacataggttggagtcattaaaactagttttcaaccactccacaaattccttgttaatgaactatagttttggcaagtcggttaggacatctactttgtgcatgacacaagtaatttttccaacaattgtttactgacagattatttcacttataattcactgtatcacaattccagtgagtcagaagtttacctacactaagttgactgggcctttaaacaacttggaaaattccagatgaTGTCATGGCTTAGGAGCTTCTGAgggactaattgacataatttgagtcaattggaggtgtacatgtgcatgtatttcaaggcctagcttcaaactcagtgtgctctttgcttgacatcatgggaaaatcaaaagaaatcagctaagacctcagaagaaaaagtGGAGAcctcctccacaagtctggttcatccttgggagaaatttcccaACGCCTGAATGCACCAAGTTcagctgtacaaacaatagtacgcaagtataaacaccatgggaccacgcagccgtgataccactcaggaaggagacgcgttctgtctcctagagatgaacatactttggtgcgaaaagtgcaaatcaatcccagaacaacagcaaagtaccttgtgaagatgctggaggtaacGGGTACagaagtatttatatccacagtaaaacgagtcctatatcaacataacctgaaaggccgctcaacaaggaagaagccactgctagactacggtttgcaactgcacttggggacaaagatcacattttttggagaaatgtcctctggtctgatgaaacaaaaatagaactgtttggccataatcaccatcgttatgtttggaggaaaagggggaggcttgcaagccgaagaacaccatcccaaccgtgaagctcgGGGGTgacagcgtcatgttgtgggggtgttttacaggagggactggtgcacttcacaaaaatatatggcatcacgaggaaggaTAATTACGCggatatattgaatcaacatctcaagacatcagtcaggaagttaaagcttggtcgcaaatgggtcttccaaatggacaatgaccccaagcatacttccaaagttgtggaaaaatggcccaaggacaacaaagtccaggcattggagtggccatcacaaagccctgacctcaatcctatagaacatttgtgggcagaactgaaaagcgtgtgtgagcaaggaggcatacaaacctgactcagttacaccagctctgtcaggaggattgggccaaaattcacccaacttattgtgggaagcttgtggaaggctacccgaaacgtttgacccaagttaaacaatttaaagacaatgctaccaaatactaattgagtgtatgtaaacttctgacccgctgggaatgtgatgaaagaaattaaagctgaaataaatcattctcgctactattattctggcatttcacattcttaaaataaagtggtgatcctaactgacctaagaccgggAATATTTACTAGGGTTAAATGGCAGGAATTGGAGAAAAATTAGtaactgtatttggctaaggtgtatgtaaacttcagactttaactgtgtatgtatgtatgtatgtatatatatgtatgtagacagacagacagacacatagacagacagacatttggacacactcattccagggtttttctttatttgtgctattttctatattgtataataatagtgaagacatccaaattatgtaacaacacatatggaatcatgtagtaaccaaaaaagtgttaaacaaattatatttgagattcgttAAAGTTGCCACCCTTCgtcttgatgaaagctttgcacacacttggcattatctcaaccagctctATGAGGTAGACACctgcaatgcatttcaattaacaggtgtgccatgttaatttgtggaatttctttccttaatgcgtttgagccaatcagttgtgttgtgacaaggtagggctggtatacagaagagaggcttggtaactaatgaacttatcctctgcagcagaggtaacttggtcttcctttcctgtggcggccctcatgagagccagttacatcTTAGCGCTTGAATTAAAAGTTATTgcaattttccggattgactgaccttgatgtcttatagtaatgatggatttgtcatttctctttgcttatttgagctgttcttgccataatatgtacttcgtcttttaccaaatagggctatcttctgtgtatatatatgtatatatgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU291344 lncRNA downstream 119909 39283550 ~ 39288177 (-) True LOC118954848
TU291335 lncRNA downstream 132529 39275335 ~ 39275557 (-) True G255686
TU291332 lncRNA downstream 134837 39272997 ~ 39273249 (-) True G255683
TU291328 lncRNA downstream 155320 39252552 ~ 39252766 (-) True G255679
TU291303 lncRNA downstream 156704 39237182 ~ 39251382 (-) True LOC110519952
TU291488 lncRNA upstream 57180 39467577 ~ 39515975 (-) True G255808
TU291581 lncRNA upstream 207246 39617643 ~ 39621075 (-) True G255897
TU291596 lncRNA upstream 235953 39646350 ~ 39646598 (-) True LOC110519961
TU291600 lncRNA upstream 246630 39657027 ~ 39657546 (-) True G255916
TU291618 lncRNA upstream 261621 39672018 ~ 39672218 (-) True G255920
XM_021596863.2 mRNA downstream 14546 39388775 ~ 39393540 (-) True LOC110519954
LOC118944667 mRNA downstream 43171 39345765 ~ 39364915 (-) True LOC118944667
XR_005044924.1 mRNA downstream 119871 39282509 ~ 39288215 (-) False LOC118954848
XM_036974067.1 mRNA downstream 138620 39258791 ~ 39269466 (-) True LOC110519953
XM_036974065.1 mRNA downstream 138667 39258791 ~ 39269419 (-) False LOC110519953
XM_021596865.2 mRNA upstream 835 39411232 ~ 39508802 (-) False LOC110519955
XM_021596864.2 mRNA upstream 835 39411232 ~ 39508805 (-) False LOC110519955
XM_036974071.1 mRNA upstream 835 39411232 ~ 39508811 (-) False LOC110519955
XM_021596868.2 mRNA upstream 221102 39631499 ~ 39643295 (-) False LOC110519957
XM_021596871.2 mRNA upstream 221102 39631499 ~ 39643295 (-) True LOC110519957
TU287636 other downstream 2674646 36731845 ~ 36733440 (-) True gpatch3
TU286962 other downstream 3050115 36357483 ~ 36357971 (-) True G251681
TU286719 other downstream 3263514 36140112 ~ 36144572 (-) True G251462
TU285142 other downstream 4511790 34895958 ~ 34896296 (-) True G249990
TU285130 other downstream 4518132 34889506 ~ 34889954 (-) True G249978
TU291595 other upstream 234174 39644571 ~ 39645743 (-) True G255911
TU291727 other upstream 408251 39818648 ~ 39818980 (-) True G256016
TU292346 other upstream 912109 40322506 ~ 40322898 (-) True G256616
TU292362 other upstream 924813 40335210 ~ 40335440 (-) True G256632
TU295117 other upstream 2353420 41763817 ~ 41767588 (-) True G259259

Expression Profile