RNA id: TCONS_00029337


Basic Information

Item Value
RNA id TCONS_00029337
length 5602
RNA type mRNA
GC content 0.39
exon number 10
gene id XLOC_014867
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 29834440 ~ 29853435 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCACGATCCGTCCAATCATCTTAGAGTGTTACCCTGGCATTTCCTGTGTCAGTTGGAATCGGCAGTGGGAAGGGTAAAGAGTGGTGACAAACATAAGAAGTGGTTTCTTAGACCAAAGTAAGACACtgctattattttaaacattattacttTAAAGCGCGAACACGTTAAATGTACATGTTTAGCGAAATATTGACAAATTAGAGCGCGTCAATTCAGTATTCGGATGTTTAACTGTGCGTTTTGTTAGCCACGACAGCTAAACTAGTCGAGCGAGATGGTACACAGCCACAGCTCTCCTCTCAGTTATacttatatacatatttacagcTATTATCAATCAGGTTAAAGTAAAACATGTTCTTTGTTTTGCACGTCTGTTAGTAATAGTTTGACAACTGCACGAAGGACTGAATGATTGACAATCGTCTGATAGCTGTAAACGTGATCTCTAGTGTTTAGTGATTAGCGTGTTTTTACCGTTGTTACCATGGTGAGTTAAAGAGTCAACTGTCGGCCTGGTTTGTTTGGTGAATTCTTTTACAAAAAGTGATTAGTAATGGCGAGGCTGAATTGAAACCGAAACCTTCAAGCTGTTTTATGATGAAGCGTGTCGTCTTGTTAGTCTTTAACTTGTGCATTGTGTGTTTTAGTATTTGCTTATAAATTAGCCATGCAGAGGCAAATGGAGGATCCTGCAGCTGATAGCAGTGCAGATGATACTGAGGAGAGCACGCCTGCATCTGAGATGACCAACAGCCCTAAAGAAGCTGAAACACAGCCGGACGGCTCACCAGCCAACAAAGATGAAGGCTTGGCAGAGGCTGGGGCAATTTCTTCTTGTGATATGGCTGAGGAGCTGAGCAGACAGCTGGAGGACATCCTCAGCACCTACTGTCATGAGGATGGCAGTGTTGGCAGCAAGAATGCCGCCGTGACCAATGGTGTGGAAGTCAATGGGCTGTCTGAGAAGGAAAACGGCAAGCAGGAGGAAGCCAAACTGAATGGCAACGGATGTGTAGAGAAAGATCAGAAGAAGCTGCAGGAGAAGAAGAAAGTGAAGGGACTGGGGAAGGAGATAACTCTTTTAATGCAGACCCTCAACACACTGAGCACTCCAGAGGAGAAGCTGGGTGGTCTCTGCAAGAAGTATGCTGAGCTGTTAGAGGAGCACCGTAATGCTCAGAAACAGATGCGGGTGTTGCAGAAGAAGCAGACGCAGCTCATTCAGGAGAAGGACCATCTAAGAAATGAGCACAGCAAGGCCATCCTGGCACGCAGCAAACTGGAAAGTCTCTGTCGAGAATTGCAGAGGCACAACCGCACACTTAAGGAGGATGGTGTGCAACGTGCCCGATTGGAGGAGGAGAAAAGGAAAGAAGTGACTTCACACTTCCAGGTGACACTGAATGACATCCAGGCTCAGATGGAGCAGCACAATGAGCGGAATGCAAACCTGAGACAGGAGAACATGGAGCTGGCTGACAAACTAAAGAAGCTTATTGAGCAGTACGAGCTCCGAGAGGAGcatATTGACAAGGTGTTCAAACAGAAAGATCTGCAACAGCAGCTAGTAGATGCAAAGCTTCATCAGGCACAGGGTCTGCTCAAAGACTCAGAGGACCGGCATCAGAAAGAGAAGGACTTTCTCCTGAAAGAGGCAGCAGAGTCTCAGAGGATGTATGAGCTCATGAAACAACAGGAAGTTCATCTGAAACAGCAGCTTTCGTTGTACACCGAGAAGTTTGAAGAGTTCCAAAACACACTTTCCAAAAGCAACGAGGTCTTTACTACATTCAAACAAGAGATGGAAAAGATGACAAAGAAGATCAAGAAGCTGGAGAAGGAAACGACCATGTACAGATCACGATGGGAAAGCAGTAACAAAGCCCTGCTGGAAATGGCAGAAGAGAAAACACTAAAAGACAAGGATTTTGAAAGCCTGCAGGTGAAGGTGCAGCGACTGGAGAAGCTCTGTCGCGCGCTACAGATAGAGCGCAACGAGTTAAGTAAGAAAGTTCAGAGTTTTTCTACAGGTGCCGAAAGTCGGCTGGACACAGAGTCGGGGTCACCTCCTGAAGCCACAGACTCTGAGGAGGGCAGCCCCGTCCACCAGAACACCCCAGAGACTCCACAAAGCGCCTGTAGCCCGGCGTGCCACTGCGGACCAGACCTGGAGGCCGAGACTCGCAGAGAGGTGTGTTCAGCCCAGGATTGAGTCTTGCTGTCTCCGGTGGGCCAGGACACACACAATCCTTCCCGCCTCCCCCCCACCACAAACCTCCACGAGCAGGTGGCGTCTTGTTGTTTTTATGCGTCCACGGACCTGCTGACTCGTCTGCTCTTGGGGGTTTTCATCGTGTCAGGGAAGATTGTGCCTTCAAACATGATTCCTATGCTGCGTTTCTACTCTTTGGTTTTTATGTGGCTCGCTTTAATTCCATTATTTTCATTTAGAAAGGGCATGGGTGTTGCTGCTGTCTCGGAATGCTCAGTGTTTGTCCACTAAATGCTTGTTTTTCTTTGTCAGTTTGGTGTTAAGAATATTAACAGACTGCTGAAATTGAAGAAAATAGTTTGTGAGgcagttttgttttctttctttaggcagttttatttaatttctggccTTAAGTTGTCATGTCAGGTAAAATCTGCTGGTATACTTTCCCTTTTTTTTAGTTTGTCGTCCTTAAATCAGTTTGCACCAAACGAAGAATGTATGGTTTGTTATCCATCACTTGTCGGAGTTTAGAATTGTAGACGTACATTTAAGACTAACATTATTTTAAGTTGAAGGCTCAGCTAATCTGAACCCAGGATTCGCTTTTGCACAACACTTGAATTTTTCACATGTTTCGTTTAACTTAAGTTTACACCACTAGTATTTTTGGTTTATATACTGTAGATGCATTCCTTTAACTCATTCCATTAACTTCTAATTGGTAACATGCACTTAAATTATGTCATGACCACTTTTTCAGTCTGCGATTTCACAATTTTCTGCTTACATTTGTGTTTATGGCGtacaaattgtatttaatatattcatatagTTAAAAAAGGAAGAATACATACATCCCCAAGTCTAGTTAGGTCAGAAGATTTAAAAACACTATGCAATTCTAGCTCTGTTCATGTCATCTTGGTGTTTAGCAGGTGAGCAAAGCACTGACATGCTGAGAAATGAATGTAAGTTCCACACAAAGTGACTTAGTCCAGTGATGTCAGTCAATTCCAGCACTCTTGGATTTTTTGAGTTTGTTTTCCAGTATGTTTTAGCACACTTGCAGTAGCTCTCTGAGCAGATTAGTAAAATGTTGGTGTAGTGTTGAGCATGAAGTGCATCCAGTCATCAGTTGGCCATGTAAAATCTTGCGCATTCCATTCCAAGTCATGGTATCTGCTTCAATTGAGATTCTTTTGTTTCAAAAAGTTTGTCAACTGGTATTCGTGAGTCGTTTTATCATTTGCTCTTCATTCAAATTTGACATTTCCATTATAAAAGAAGGTACCAAAGATCTGTGTTGATTTCACACCCTGTATACATTTATTTGCGAATTAAAATACTAAAGAAATTCAaatgatttgtgtgttttttccccCTGTTTGTAACAAACAAGTAAAATCAAGTGTTGGTATTATTTATGGAATGTCTAATATGGAATCCCCAGTTGTTGGGTTTATAacattttaccatgatttacaaaAGACACACTTACAGTATGTTATTCAGTTTCACAGTTAATATAGCAAAAAAAGatcttgtcaggcatatttataacaaaatatttttaaggaTCATTGTGCAGCCCCCAAATAGAAAAggattgtcattttaaatctataCTTTCTATCTTTATGCTTTGCACCTGTCCTTCAAACCACTAGTTTCATCCATTTATaagcaatattcattcattttctttatggtTTAGTCTCTTTCATAATCAAGAGTCACCACgttggaatgaacagccaacttatgcagcatttgttttacgctgCGGGTTCTCTTCCAGCTgccacactgggaaacacccatacacactctttcacttGTACACTGcacccaatttagtttattcaattcacctataccgcatgtctttggactgtgggggaaacccgagcactgggaggaaacccatgcgaacatggggagaacatgcaaacttcacacagaaatgccaattgacccagccagggctcgaaccagcaacccatttttgaaaaatcatttGTAAATCACATATTTATAAGCACATGTCAGAATGGGACTGctgttattattaaatgtatgtttcgCTGGATGACGATGAAACATTGTTTCTggtattttaaccctttaactgtcaccaAGAAAATTTTTTGGATTTCTTAACTCTTTCTTAAAACACATAGAACACCTTTTTTCGAAGTATGCCATCAAATATTTCAGATCTTCATTTAACTTGttttcttattgttttttttttttgtttggtttgtttattgtttttttcacaataaaaccaaaatcaagtgtagaagTGCAACAGGAGGATtatgtttgttagattttttttgttgttgttgttgttgttgtttttgtaaacCAATGTTTTGTAGTGTAAACCATTTAAAAGTCATTCttcaaaacagtaaaaacatggtcaaccgtttGCTAGAGGTGCAGTCAATATGCTAAAGGGCATTTAAAATACTTTCACTGTATATCATTCTTTTAACAAGTTTAGTTTGTTGCGAGCACAAAAAGGTTGTCTCATCTTTGACCCATGTGCTTTGTTATATAATAAAGTGTTTAGTATAAATTCTTAAGTGACTGTTTTAATTAACAGCGGTGTTTAATGACATCTCTGTAACAAACATAAATCATTTAGTcgtttcttttaataaaaaaataaatatttaccaaTCAATGGTTCAGTAATGGAATAGACCATGTCAACCAGCTTTTTAATGAGGAAGGTCTCACAAAATTGAAAAGTCCAGTAACTCTTAAAGAGTTTGCAATAACTACAGGTGCTATTCCCTCTGGATTAcacatgcttttttaaaaaaaacaatacagtatcACCAGGACAAGAAACATACATGCAGTTTGTAGACCTTTAATATGTATAATCTGTTAAATCTCTAAATTGctgttatctttttattttgcccTCTTCACTCTCAATTTCTTTATGTATAATATATTTCCTCAGATCAGATAAGCTGTCgatctttctttatttttgtttgatttctgtagggttttttctcttgttttttcttcattttctttctttattggCACCATTGTAAATATTCCAGTGTTTAATATTGTAAATGATGTGTACCAAATatatctttctgttaaacaatcaattgtaaaaaaaaaaaaaaacacaaatacaaacaaacaaataaataattgtttcatTCAAGAAACAAAACTGGGATGGCACTTCTCCCAGATTTTATTTATCACGAGGTATACGACAAAGGTGTCCATTGtctccttatttatttttattagattcCCAATTTTCACTTCCTTTATATCTAATAGTGGTCTTAATGGTATTCGTATAGCTGACAAACAAATTCTCATCAG

Function

GO:

id name namespace
GO:0019905 syntaxin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2900 Predicted to enable syntaxin binding activity. Orthologous to human TXLNA (taxilin alpha).

Ensembl:

ensembl_id ENSDART00000188508

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029335 lncRNA downstream 1621 29822504 ~ 29832819 (-) False XLOC_014866
TCONS_00029336 lncRNA downstream 1622 29829985 ~ 29832818 (-) True XLOC_014866
TCONS_00030285 lncRNA downstream 38152 29750328 ~ 29796288 (-) True XLOC_014864
TCONS_00030284 lncRNA downstream 80072 29750328 ~ 29754368 (-) False XLOC_014864
TCONS_00030283 lncRNA downstream 82773 29750328 ~ 29751667 (-) False XLOC_014864
TCONS_00030286 lncRNA upstream 60914 29914349 ~ 29915967 (-) True XLOC_014869
TCONS_00029341 lncRNA upstream 293935 30147370 ~ 30276212 (-) False XLOC_014870
TCONS_00029789 lncRNA upstream 293955 30147390 ~ 30230981 (-) False XLOC_014870
TCONS_00029790 lncRNA upstream 377310 30230745 ~ 30300852 (-) False XLOC_014870
TCONS_00030287 lncRNA upstream 377345 30230780 ~ 30272896 (-) False XLOC_014870
TCONS_00029334 mRNA downstream 1564 29822500 ~ 29832876 (-) False XLOC_014866
TCONS_00029331 mRNA downstream 397331 29383486 ~ 29437109 (-) False XLOC_014863
TCONS_00029332 mRNA downstream 397332 29390638 ~ 29437108 (-) True XLOC_014863
TCONS_00029329 mRNA downstream 530652 29296191 ~ 29303788 (-) False XLOC_014862
TCONS_00029330 mRNA downstream 532191 29297402 ~ 29302249 (-) True XLOC_014862
TCONS_00029340 mRNA upstream 13054 29866489 ~ 29887629 (-) True XLOC_014868
TCONS_00029344 mRNA upstream 497153 30350588 ~ 30359059 (-) True XLOC_014872
TCONS_00029345 mRNA upstream 546937 30400372 ~ 30403922 (-) False XLOC_014873
TCONS_00029346 mRNA upstream 548109 30401544 ~ 30404096 (-) True XLOC_014873
TCONS_00029347 mRNA upstream 554882 30408317 ~ 30417140 (-) False XLOC_014874
TCONS_00029333 other downstream 49228 29785095 ~ 29785212 (-) True XLOC_014865
TCONS_00029320 other downstream 1392480 28441841 ~ 28441960 (-) True XLOC_014853
TCONS_00029305 other downstream 2228700 27589335 ~ 27605740 (-) True XLOC_014843
TCONS_00029303 other downstream 2249703 27581750 ~ 27584737 (-) True XLOC_014841
TCONS_00029297 other downstream 2259346 27571706 ~ 27575094 (-) True XLOC_014839
TCONS_00029339 other upstream 8424 29861859 ~ 29873115 (-) False XLOC_014868
TCONS_00029343 other upstream 495868 30349303 ~ 30350198 (-) False XLOC_014872
TCONS_00029352 other upstream 575897 30429332 ~ 30431750 (-) False XLOC_014875
TCONS_00029367 other upstream 899374 30752809 ~ 30799963 (-) True XLOC_014881
TCONS_00029373 other upstream 1146398 30999833 ~ 31007417 (-) False XLOC_014886

Expression Profile

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