RNA id: TU293872


Basic Information

Item Value
RNA id TU293872
length 567
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G258092
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 41378901 ~ 41379713 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggaaaaactccctagaaaggccaaaacctaggaagaaacctagagaggaaccaggctatgtgggttggccagtcctcttctggctgtgccgggtggagattataacaaaacatggtcaagatgttcaaatgttcataaatgaccaacatggtcgaataataataataataataaggcagaacagttgaaactggagcagcagcacagccaggtggactggggacagcaaggagtcatcatgtcaggtagtcctggggcatggtcctaggactcaggtcctccgagagagagaaagagagaaggagagaattagagaacgcacacttagattcacacaggacaccaaataggacaggagaagtactccagatataacaaactgaccctagccccccgacacataaactactgcagcataaatactggaggctgagacaggaggggtcaggagacactgtggcccactccgaggacacccccggacaaggccaaacaggaaggatataaccccacccactttgccaaagcacagcccccacaccactagagggatatcttcaaccacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU293705 lncRNA downstream 86594 41292096 ~ 41292307 (-) True G257932
TU293676 lncRNA downstream 108382 41270294 ~ 41270519 (-) True G257903
TU293604 lncRNA downstream 142447 41175188 ~ 41236454 (-) True G257831
TU293461 lncRNA downstream 392905 40985620 ~ 40985996 (-) True G257692
TU293456 lncRNA downstream 397358 40981307 ~ 40981543 (-) True G257687
TU293915 lncRNA upstream 58309 41438022 ~ 41438261 (-) True G258135
TU293916 lncRNA upstream 58716 41438429 ~ 41438745 (-) True G258136
TU294911 lncRNA upstream 87272 41466985 ~ 41540697 (-) True G259059
TU294903 lncRNA upstream 129544 41509257 ~ 41551376 (-) True G259054
TU295105 lncRNA upstream 347285 41726998 ~ 41727234 (-) True G259247
XM_021596894.2 mRNA downstream 973866 40396378 ~ 40405035 (-) True LOC110519968
XR_005039881.1 mRNA downstream 1096025 40279614 ~ 40282876 (-) True LOC118944520
XM_036974094.1 mRNA downstream 1253638 40111206 ~ 40125263 (-) False LOC110519967
XM_036974106.1 mRNA upstream 863863 42243576 ~ 42291605 (-) False LOC110519979
XM_036974107.1 mRNA upstream 863863 42243576 ~ 42291605 (-) False LOC110519979
XM_036974108.1 mRNA upstream 863863 42243576 ~ 42291605 (-) False LOC110519979
XM_036974109.1 mRNA upstream 863863 42243576 ~ 42291605 (-) False LOC110519979
XM_036974110.1 mRNA upstream 863863 42243576 ~ 42291605 (-) False LOC110519979
TU292362 other downstream 1043461 40335210 ~ 40335440 (-) True G256632
TU292346 other downstream 1056003 40322506 ~ 40322898 (-) True G256616
TU291727 other downstream 1559921 39818648 ~ 39818980 (-) True G256016
TU291595 other downstream 1733158 39644571 ~ 39645743 (-) True G255911
TU291417 other downstream 1870199 39399261 ~ 39508702 (-) True LOC110519955
TU295117 other upstream 384104 41763817 ~ 41767588 (-) True G259259
TU295466 other upstream 905917 42285630 ~ 42293169 (-) False G259576
TU295453 other upstream 909279 42288992 ~ 42290036 (-) False G259576
TU295465 other upstream 909279 42288992 ~ 42327995 (-) False G259576
TU295472 other upstream 910546 42290259 ~ 42319385 (-) False G259579

Expression Profile