RNA id: TCONS_00029341


Basic Information

Item Value
RNA id TCONS_00029341
length 626
lncRNA type lincRNA
GC content 0.50
exon number 4
gene id XLOC_014870
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 30147370 ~ 30300852 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGGTCGAGGAGAGATGAAGTCTCTGGCGGAGCGGCTTAGACGGTGTTGTCGAACCAACCTTCAGAACTGCTGCTGATTTTCTGCATCCAGAGCTAATGGGAGCGAGACCACCGCCGAGTGACAGTCATGTCGAACTGTGTGTGATGGAGACAGATTGGGAGCATCAATCACTGTGTCACACCAGTTTCGCTTCACACCCTCCCTGAAGGGGGACCATGTCGGCCGACAGCTCCAGACTCCAGATCACCACTGCAGTGATTGATTATAAGATCAAAGCACTCCTGAAAGTATCGTGTGTACAGGGGTCATATGGATGGATGTGTTTGCTGTCCACAGTTGGGCCATTACTGCAGCACAGCAGTCAGGAGAGATGGAGTCAGGTGGACCTGCGGTAGGAAAGAGTCTTTCCAGGTTGCTGTTAAGGACAAACTGCCTCATGCTGTCTGTGCTCAGGGGGGAAAATGGGCTAGCGGAGCGTCCAAGTTCTTCTTGACGGGTGTTTGACAGAAAGCCCTATATATTACTTCGCACTTCAGCAGAAAACATATGAAGGTATGTACTGTAGGTATTCTCACATGACTCTCTCATGAGGGAATACAGGCAGAATATCCAAATAACTGATTTT

Function

GO:

id name namespace
GO:0044248 cellular catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:1901981 phosphatidylinositol phosphate binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194902

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030286 lncRNA downstream 231403 29914349 ~ 29915967 (-) True XLOC_014869
TCONS_00029335 lncRNA downstream 314551 29822504 ~ 29832819 (-) False XLOC_014866
TCONS_00029336 lncRNA downstream 314552 29829985 ~ 29832818 (-) True XLOC_014866
TCONS_00030285 lncRNA downstream 351082 29750328 ~ 29796288 (-) True XLOC_014864
TCONS_00030284 lncRNA downstream 393002 29750328 ~ 29754368 (-) False XLOC_014864
TCONS_00030290 lncRNA upstream 36633 30312845 ~ 30316143 (-) True XLOC_014871
TCONS_00030291 lncRNA upstream 71297 30347509 ~ 30352136 (-) False XLOC_014872
TCONS_00029342 lncRNA upstream 71297 30347509 ~ 30354355 (-) False XLOC_014872
TCONS_00030292 lncRNA upstream 193758 30469970 ~ 30470501 (-) True XLOC_014876
TCONS_00030293 lncRNA upstream 316107 30592319 ~ 30623732 (-) True XLOC_014879
TCONS_00029340 mRNA downstream 259741 29866489 ~ 29887629 (-) True XLOC_014868
TCONS_00029337 mRNA downstream 293935 29834440 ~ 29853435 (-) False XLOC_014867
TCONS_00029338 mRNA downstream 293968 29836458 ~ 29853402 (-) True XLOC_014867
TCONS_00029334 mRNA downstream 314494 29822500 ~ 29832876 (-) False XLOC_014866
TCONS_00029332 mRNA downstream 710262 29390638 ~ 29437108 (-) True XLOC_014863
TCONS_00029344 mRNA upstream 74376 30350588 ~ 30359059 (-) True XLOC_014872
TCONS_00029345 mRNA upstream 124160 30400372 ~ 30403922 (-) False XLOC_014873
TCONS_00029346 mRNA upstream 125332 30401544 ~ 30404096 (-) True XLOC_014873
TCONS_00029347 mRNA upstream 132105 30408317 ~ 30417140 (-) False XLOC_014874
TCONS_00029348 mRNA upstream 133669 30409881 ~ 30422239 (-) False XLOC_014874
TCONS_00029339 other downstream 274255 29861859 ~ 29873115 (-) False XLOC_014868
TCONS_00029333 other downstream 362158 29785095 ~ 29785212 (-) True XLOC_014865
TCONS_00029320 other downstream 1705410 28441841 ~ 28441960 (-) True XLOC_014853
TCONS_00029305 other downstream 2541630 27589335 ~ 27605740 (-) True XLOC_014843
TCONS_00029303 other downstream 2562633 27581750 ~ 27584737 (-) True XLOC_014841
TCONS_00029343 other upstream 73091 30349303 ~ 30350198 (-) False XLOC_014872
TCONS_00029352 other upstream 153120 30429332 ~ 30431750 (-) False XLOC_014875
TCONS_00029367 other upstream 476597 30752809 ~ 30799963 (-) True XLOC_014881
TCONS_00029373 other upstream 723621 30999833 ~ 31007417 (-) False XLOC_014886
TCONS_00029380 other upstream 803114 31079326 ~ 31081251 (-) False XLOC_014888

Expression Profile

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