RNA id: TU295475


Basic Information

Item Value
RNA id TU295475
length 441
lncRNA type read_through
GC content 0.50
exon number 3
gene id G259579
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 42290259 ~ 42319385 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGTAGTGGGGAAACTCAATGTGGGAGGAGACAAAGACCGCGTTTCTGTTGTCCAGTACGGTAGAGATCAAGAAGTTCATTTCTATCTGAACACATACACCACAAAGGAGGACATTCTTAACACTGTGAGAAGTCTGAGGCACAGAGGTGGTAGACCCCTTAACACTGGGGCAGCCCTCCAATACGTAAGGGACAATGTCCTTACTGCCTCCTCTGGAAGCAGAAGCCAAGAGGGCGTCCCTCAGATGCTGATACTGCTGAGTGGGGGAAGGTCCAGTGATAATGTTGACGTACCAGCTTCTGCCCTGAAAGACAGTGGGGTCTTGATCTTTGGCATTGGAACCAGAAATTCCAGCAGAGAGGTTCAAGGGATTGCCACTGATCCTAGTTTTTCCCAGTCTGTTTCTGAATTCACTGACCTCCCCAGCGTCCAGGAGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295482 lncRNA downstream 7741 42279545 ~ 42282518 (-) True LOC110519979
TU295515 lncRNA downstream 20135 42269230 ~ 42270124 (-) True G259614
TU295501 lncRNA downstream 56578 42233442 ~ 42233681 (-) True G259600
TU295496 lncRNA downstream 62468 42227552 ~ 42227791 (-) True G259595
TU295435 lncRNA downstream 92122 42196726 ~ 42198137 (-) True G259563
TU295517 lncRNA upstream 61 42297846 ~ 42314687 (-) False col6a3
TU295587 lncRNA upstream 135416 42433201 ~ 42433418 (-) True G259685
TU295594 lncRNA upstream 141495 42439280 ~ 42439506 (-) True G259691
TU295603 lncRNA upstream 149502 42447287 ~ 42447514 (-) True G259700
TU295683 lncRNA upstream 288499 42586284 ~ 42590360 (-) False G259779
XM_021596894.2 mRNA downstream 1885224 40396378 ~ 40405035 (-) True LOC110519968
XR_005039881.1 mRNA downstream 2007383 40279614 ~ 40282876 (-) True LOC118944520
XM_036974094.1 mRNA downstream 2164996 40111206 ~ 40125263 (-) False LOC110519967
XM_036964861.1 mRNA upstream 31854 42329639 ~ 42334795 (-) True LOC110519978
XM_036974111.1 mRNA upstream 37122 42334907 ~ 42339654 (-) False LOC118936375
XM_036974112.1 mRNA upstream 39695 42337480 ~ 42339654 (-) True LOC118936375
XM_021596918.2 mRNA upstream 42125 42339910 ~ 42364268 (-) True LOC110519982
XR_005039884.1 mRNA upstream 157339 42455124 ~ 42457706 (-) True LOC110520683
TU295453 other downstream 223 42288992 ~ 42290036 (-) False G259576
TU295117 other downstream 522671 41763817 ~ 41767588 (-) True G259259
TU292362 other downstream 1954819 40335210 ~ 40335440 (-) True G256632
TU292346 other downstream 1967361 40322506 ~ 40322898 (-) True G256616
TU291727 other downstream 2471279 39818648 ~ 39818980 (-) True G256016
TU295484 other upstream 457 42298242 ~ 42303645 (-) False col6a3
TU295485 other upstream 457 42298242 ~ 42306007 (-) True col6a3
TU295461 other upstream 7543 42305328 ~ 42327180 (-) False G259576
TU295450 other upstream 24954 42322739 ~ 42325778 (-) True G259576
TU297567 other upstream 1691739 43989524 ~ 44031505 (-) True G261580

Expression Profile