RNA id: TCONS_00029790


Basic Information

Item Value
RNA id TCONS_00029790
length 657
lncRNA type inter_gene
GC content 0.47
exon number 4
gene id XLOC_014870
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 30147370 ~ 30300852 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cagctTATAAGCAACCTATTGCTTTTTTAGCATAGTCTTTACACACTAACCAGTATCGACCTCGATAAACAGTATTATATTCGCTTGAATATTTTTACTGCGATCAACAGTTTAGCCACGCCCACACAAATCACCTGCGTATCAAACATGGAACCAGAGAGACTTATCGTGAAAGCTTCAAGTCGGATATTACCTTAAAGATCATTTACAGTTCCACCAAGAAAACCATAAAAGCACCACAGAAGTAACTCAAAGGGGGTCGAGGAGAGATGAAGTCTCTGGCGGAGCGGCTTAGACGGTGTTGTCGAACCAACCTTCAGAACTGCTGCTGATTTTCTGCATCCAGAGCTAATGGGAGCGAGACCACCGCCGAGTGACAGTCATGTCGAACTGTGTGTGATGGAGACAGATTGGGAGCATCAATCACTGTGTCACACCAGTTTCGCTTCACACCCTCCCTGAAGGGGGACCATGTCGGCCGACAGCTCCAGACTCCAGATCACCACTGCAGTGATTGATTATAAGATCAAAGCACTCCTGAAAGTATCGTGTGTACAGGGGTCATATGGATGGATGTGTTTGCTGTCCACAGTTGGGCCATTACTGCAGCACAGCAGTCAGGAGAGATGGAGTCAGGTGGACCTGCGGTAGGAAGTA

Function

GO:

id name namespace
GO:0044248 cellular catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:1901981 phosphatidylinositol phosphate binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030286 lncRNA downstream 314778 29914349 ~ 29915967 (-) True XLOC_014869
TCONS_00029335 lncRNA downstream 397926 29822504 ~ 29832819 (-) False XLOC_014866
TCONS_00029336 lncRNA downstream 397927 29829985 ~ 29832818 (-) True XLOC_014866
TCONS_00030285 lncRNA downstream 434457 29750328 ~ 29796288 (-) True XLOC_014864
TCONS_00030284 lncRNA downstream 476377 29750328 ~ 29754368 (-) False XLOC_014864
TCONS_00030290 lncRNA upstream 11993 30312845 ~ 30316143 (-) True XLOC_014871
TCONS_00030291 lncRNA upstream 46657 30347509 ~ 30352136 (-) False XLOC_014872
TCONS_00029342 lncRNA upstream 46657 30347509 ~ 30354355 (-) False XLOC_014872
TCONS_00030292 lncRNA upstream 169118 30469970 ~ 30470501 (-) True XLOC_014876
TCONS_00030293 lncRNA upstream 291467 30592319 ~ 30623732 (-) True XLOC_014879
TCONS_00029340 mRNA downstream 343116 29866489 ~ 29887629 (-) True XLOC_014868
TCONS_00029337 mRNA downstream 377310 29834440 ~ 29853435 (-) False XLOC_014867
TCONS_00029338 mRNA downstream 377343 29836458 ~ 29853402 (-) True XLOC_014867
TCONS_00029334 mRNA downstream 397869 29822500 ~ 29832876 (-) False XLOC_014866
TCONS_00029332 mRNA downstream 793637 29390638 ~ 29437108 (-) True XLOC_014863
TCONS_00029344 mRNA upstream 49736 30350588 ~ 30359059 (-) True XLOC_014872
TCONS_00029345 mRNA upstream 99520 30400372 ~ 30403922 (-) False XLOC_014873
TCONS_00029346 mRNA upstream 100692 30401544 ~ 30404096 (-) True XLOC_014873
TCONS_00029347 mRNA upstream 107465 30408317 ~ 30417140 (-) False XLOC_014874
TCONS_00029348 mRNA upstream 109029 30409881 ~ 30422239 (-) False XLOC_014874
TCONS_00029339 other downstream 357630 29861859 ~ 29873115 (-) False XLOC_014868
TCONS_00029333 other downstream 445533 29785095 ~ 29785212 (-) True XLOC_014865
TCONS_00029320 other downstream 1788785 28441841 ~ 28441960 (-) True XLOC_014853
TCONS_00029305 other downstream 2625005 27589335 ~ 27605740 (-) True XLOC_014843
TCONS_00029303 other downstream 2646008 27581750 ~ 27584737 (-) True XLOC_014841
TCONS_00029343 other upstream 48451 30349303 ~ 30350198 (-) False XLOC_014872
TCONS_00029352 other upstream 128480 30429332 ~ 30431750 (-) False XLOC_014875
TCONS_00029367 other upstream 451957 30752809 ~ 30799963 (-) True XLOC_014881
TCONS_00029373 other upstream 698981 30999833 ~ 31007417 (-) False XLOC_014886
TCONS_00029380 other upstream 778474 31079326 ~ 31081251 (-) False XLOC_014888

Expression Profile

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