RNA id: TU295474


Basic Information

Item Value
RNA id TU295474
length 1083
RNA type TUCP
GC content 0.47
exon number 2
gene id G259579
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 42290259 ~ 42319385 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACATGATCCCAGttacgctctgtctgtctctgacttcaCTGACCTTCCAAACATCCAGCAGCAACTTCTGTCCTCGGTGGAGTCAGTTGTTATTGACGTTACGCCAGAATCGACAACAGATTTAGGTATGTGTCATCACTGTTAATTGGGAGTCAGGAAGTGTTAGTAAAATGTCAGCTGAGTCTTAGAAACAACGGTATAATTTGACCACAAGCCCCACATTTCAACTGTCTGATTGACATAATCTATTTATTTTCTCAGTTCCTCATGACACCTCCAGAAAGGATGTGGTATTCCTTGTGGATGGTTCTGATGGCACAAGGAATGGATTCCCAGCAATGCGTGATTTTGTTCAGAGAGTAGTGGGGAAACTCAATGTGGGAGGAGACAAAGACCGCGTTTCTGTTGTCCAGTACGGTAGAGATCAAGAAGTTCATTTCTATCTGAACACATACACCACAAAGGAGGACATTCTTAACACTGTGAGAAGTCTGAGGCACAGAGGAGGTAGACCCCTTAACACTGGGGCAGCCCTCCAATACGTAAGGGACAATGTCCTTACTGCCTCCTCTGGAAGCAGAAGCCAAGAGGGCGTCCCTCAGATGCTGATACTGCTGAGTGGGGGAAGGTCCAGTGATAATGTTGACATACCAGCTTCTGCCCTGAAAGACAGTGGGGTCTTGATCTTTGGCATTGGAACCAGAAATTCCAGCAGAGAGGTTCAAGGGATTGCCACTGATCCTAGTTTTTCCCAGTCTGTTTCTGAATTCACTGACCTCCCCAGCGTCCAGGGGCAGTTTTTCTCCACACTCATAACTGTACAAGTTGAGGCCACACCCAAAACCCCAACAGTCACAGTGGACCAAAGCATTGCCAGAAAGGATGTAGTATTCCTGCTGGATGGTTCTGATGGCACTAGGAATGGCTTTCCAACAATGCGTGACTTTGTTCAAAGAGTGGTAGAGAAACTcactgtggaggagaacagagatcGAGTCTCTGTGGTCCAGTATAGCAGAGAATCAGAGGCCCACTTCTATCTGAACACTTACACAACAAAGGAAGACGTTGTGAACACCGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295457 lncRNA downstream 127 42291363 ~ 42292100 (-) False G259576
TU295482 lncRNA downstream 9709 42279545 ~ 42282518 (-) True LOC110519979
TU295515 lncRNA downstream 22103 42269230 ~ 42270124 (-) True G259614
TU295501 lncRNA downstream 58546 42233442 ~ 42233681 (-) True G259600
TU295496 lncRNA downstream 64436 42227552 ~ 42227791 (-) True G259595
TU295517 lncRNA upstream 2066 42297846 ~ 42314687 (-) False col6a3
TU295587 lncRNA upstream 137421 42433201 ~ 42433418 (-) True G259685
TU295594 lncRNA upstream 143500 42439280 ~ 42439506 (-) True G259691
TU295603 lncRNA upstream 151507 42447287 ~ 42447514 (-) True G259700
TU295683 lncRNA upstream 290504 42586284 ~ 42590360 (-) False G259779
XM_036974106.1 mRNA downstream 622 42243576 ~ 42291605 (-) False LOC110519979
XM_036974107.1 mRNA downstream 622 42243576 ~ 42291605 (-) False LOC110519979
XM_036974108.1 mRNA downstream 622 42243576 ~ 42291605 (-) False LOC110519979
XM_036974109.1 mRNA downstream 622 42243576 ~ 42291605 (-) False LOC110519979
XM_036974110.1 mRNA downstream 622 42243576 ~ 42291605 (-) False LOC110519979
XM_036964861.1 mRNA upstream 33859 42329639 ~ 42334795 (-) True LOC110519978
XM_036974111.1 mRNA upstream 39127 42334907 ~ 42339654 (-) False LOC118936375
XM_036974112.1 mRNA upstream 41700 42337480 ~ 42339654 (-) True LOC118936375
XM_021596918.2 mRNA upstream 44130 42339910 ~ 42364268 (-) True LOC110519982
XR_005039884.1 mRNA upstream 159344 42455124 ~ 42457706 (-) True LOC110520683
TU295453 other downstream 2191 42288992 ~ 42290036 (-) False G259576
TU295117 other downstream 524639 41763817 ~ 41767588 (-) True G259259
TU292362 other downstream 1956787 40335210 ~ 40335440 (-) True G256632
TU292346 other downstream 1969329 40322506 ~ 40322898 (-) True G256616
TU291727 other downstream 2473247 39818648 ~ 39818980 (-) True G256016
TU295486 other upstream 100 42295880 ~ 42301186 (-) False col6a3
TU295487 other upstream 100 42295880 ~ 42298921 (-) False col6a3
TU295488 other upstream 100 42295880 ~ 42315358 (-) False col6a3
TU295484 other upstream 2462 42298242 ~ 42303645 (-) False col6a3
TU295485 other upstream 2462 42298242 ~ 42306007 (-) True col6a3

Expression Profile