RNA id: TU298356


Basic Information

Item Value
RNA id TU298356
length 587
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G262326
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 44422491 ~ 44423077 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttttccaacagtcttgaaggagttcccacatatgctgagctcttgttggctgcttttccttcactctgcggtccaactcatcaaaaaccatctcaatttggttgagttcaggggattgtgaaggccaggtcacctgatgcatcactctccttcttggtcaaatagccctaacacagcctggaggtgtgttgggttattgtcctgttgaaaaacaaatgatagtcccactaagcccaaaccagattggatggcgtatcgctgcagaatgctgtggtagccatgctggttaagtgtgccttgaattctaaataaatcacagacagtttcaccagcaaagcaccctgtTAAGGTTAGTTTCtttgttccttgtcaatcattgtcTCATTGGTTAAATTAGCATTGTGACAATATCTTCAATTACATCAttcaaaaacctttattaatTAAATTGCAGACATATGTTGACAACAGGAACGTAATGCATGTTTACAAGTAAGTTCTGCATCAAAGAAAATGTCCCAAGTTATTTTAAGTCCAGCCCTAGTGATGTCACTGCCTATGTCATTATcttctacagtcgtggcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298353 lncRNA downstream 2268 44418079 ~ 44420223 (-) False G262325
TU298355 lncRNA downstream 3228 44417940 ~ 44419263 (-) False G262325
TU298354 lncRNA downstream 3228 44418079 ~ 44419263 (-) True G262325
TU297950 lncRNA downstream 15835 44406409 ~ 44406656 (-) True G261950
TU297923 lncRNA downstream 43199 44379089 ~ 44379292 (-) True G261924
TU298402 lncRNA upstream 69894 44492971 ~ 44493212 (-) True G262368
TU298411 lncRNA upstream 79783 44502860 ~ 44503066 (-) True G262377
TU298444 lncRNA upstream 143246 44566323 ~ 44643648 (-) True G262406
TU298376 lncRNA upstream 240828 44663905 ~ 44665382 (-) True G262342
TU298621 lncRNA upstream 392350 44815427 ~ 44815652 (-) True G262575
XM_021596942.2 mRNA downstream 128440 44290826 ~ 44294051 (-) True LOC110519999
XM_021596941.2 mRNA downstream 128445 44290826 ~ 44294046 (-) False LOC110519999
XR_005045723.1 mRNA downstream 159493 44259169 ~ 44262998 (-) True LOC118956139
XM_021596939.2 mRNA downstream 186603 44231999 ~ 44235888 (-) True LOC110519998
XR_005045714.1 mRNA downstream 680689 43706881 ~ 43741802 (-) True LOC118956029
XM_021596945.2 mRNA upstream 2291 44425368 ~ 44468711 (-) False LOC110520000
XM_021596946.2 mRNA upstream 2291 44425368 ~ 44468711 (-) False LOC110520000
XM_021596947.2 mRNA upstream 2291 44425368 ~ 44468711 (-) False LOC110520000
XM_021596948.2 mRNA upstream 2291 44425368 ~ 44468711 (-) False LOC110520000
XM_021596949.2 mRNA upstream 2291 44425368 ~ 44468711 (-) False LOC110520000
TU297567 other downstream 390986 43989524 ~ 44031505 (-) True G261580
TU295461 other downstream 2095311 42305328 ~ 42327180 (-) False G259576
TU295450 other downstream 2096713 42322739 ~ 42325778 (-) True G259576
TU295485 other downstream 2116484 42298242 ~ 42306007 (-) True col6a3
TU295484 other downstream 2118846 42298242 ~ 42303645 (-) False col6a3
TU299080 other upstream 587095 45010172 ~ 45012249 (-) True G262993
TU299078 other upstream 676263 45099340 ~ 45104263 (-) True LOC110520012
TU299385 other upstream 1113255 45536332 ~ 45537542 (-) True G263274
TU302286 other upstream 3176141 47599218 ~ 47599815 (-) True G265988
TU302595 other upstream 3608970 48032047 ~ 48033302 (-) True LOC110505248

Expression Profile