RNA id: TU298402


Basic Information

Item Value
RNA id TU298402
length 242
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G262368
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 44492971 ~ 44493212 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttgaatcacacCGTACCTTCTACACTATGCACTCTGGTTTCTGAGctgatcatgggtgcacctcctccacgctcaaggtcctaaacgatatcataaccgccatcgataaaacaCTGTACTGTGCAGTcgttttcatcgacctggccaaggctttcgactctgtcaatcagcaTATTCTTATCggaagactcaacagccttgggttctctaatgactgcctcgcctggttcacaaagtacttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298356 lncRNA downstream 69894 44422491 ~ 44423077 (-) True G262326
TU298353 lncRNA downstream 72748 44418079 ~ 44420223 (-) False G262325
TU298355 lncRNA downstream 73708 44417940 ~ 44419263 (-) False G262325
TU298354 lncRNA downstream 73708 44418079 ~ 44419263 (-) True G262325
TU297950 lncRNA downstream 86315 44406409 ~ 44406656 (-) True G261950
TU298411 lncRNA upstream 9648 44502860 ~ 44503066 (-) True G262377
TU298444 lncRNA upstream 73111 44566323 ~ 44643648 (-) True G262406
TU298376 lncRNA upstream 170693 44663905 ~ 44665382 (-) True G262342
TU298621 lncRNA upstream 322215 44815427 ~ 44815652 (-) True G262575
TU298624 lncRNA upstream 328792 44822004 ~ 44822238 (-) True G262578
XM_021596945.2 mRNA downstream 24260 44425368 ~ 44468711 (-) False LOC110520000
XM_021596946.2 mRNA downstream 24260 44425368 ~ 44468711 (-) False LOC110520000
XM_021596947.2 mRNA downstream 24260 44425368 ~ 44468711 (-) False LOC110520000
XM_021596948.2 mRNA downstream 24260 44425368 ~ 44468711 (-) False LOC110520000
XM_021596949.2 mRNA downstream 24260 44425368 ~ 44468711 (-) False LOC110520000
XM_036974211.1 mRNA upstream 30498 44523710 ~ 44586237 (-) False LOC110520004
XM_036974212.1 mRNA upstream 30498 44523710 ~ 44586240 (-) False LOC110520004
XM_036974216.1 mRNA upstream 30498 44523710 ~ 44586439 (-) False LOC110520004
XM_036974213.1 mRNA upstream 30498 44523710 ~ 44718478 (-) False LOC110520004
XM_036974214.1 mRNA upstream 30498 44523710 ~ 44718478 (-) False LOC110520004
TU297567 other downstream 461466 43989524 ~ 44031505 (-) True G261580
TU295461 other downstream 2165791 42305328 ~ 42327180 (-) False G259576
TU295450 other downstream 2167193 42322739 ~ 42325778 (-) True G259576
TU295485 other downstream 2186964 42298242 ~ 42306007 (-) True col6a3
TU295484 other downstream 2189326 42298242 ~ 42303645 (-) False col6a3
TU299080 other upstream 516960 45010172 ~ 45012249 (-) True G262993
TU299078 other upstream 606128 45099340 ~ 45104263 (-) True LOC110520012
TU299385 other upstream 1043120 45536332 ~ 45537542 (-) True G263274
TU302286 other upstream 3106006 47599218 ~ 47599815 (-) True G265988
TU302595 other upstream 3538835 48032047 ~ 48033302 (-) True LOC110505248

Expression Profile