RNA id: TU298041


Basic Information

Item Value
RNA id TU298041
length 4939
RNA type TUCP
GC content 0.42
exon number 2
gene id G262037
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 44520419 ~ 44525408 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctttattattatttttcttcatTTTATATATCTATTTATCAGGGTTTTTTTTTCTACATAAGAGTACTTTAAAAGTATGTCTTCATGCTTTAGGTGCAGCTTCAGTGTGGGAGCACATGCAAGATGGTGGTCCAGGTGGAGATTGCACAGCGGATGTGGggtgagaggagagtagaggagtccTCTGACCACCCCGAGTGGACCACACCGGGACCACTGAACAGTCACCAAATAATCACAAGGCGGTCAGGACGGCCGACCGAACGGGGATTATAGACCGCTGGGAGCACTCGGTCATAGGGAAGCAGTTCAGTTTCTTGCAAATAGTTCCGACCTGTCCATTTTGGGGGACGGTTTGTGTCATGACATCATCAATTGACATCTTTAGTGCAGTCCAAAAAATAAGAACCATACTATGGAGAAGCAGGcaggctttaaaaaaagaagaagtttCAAACAGTCAGTTTTAAAAGAGAGCACGACGAAGGGGGAAACAGAGGGGGAGGGGAACCTTTCTTTCTGGTCCCGTTCCTCCTGGGGCCTCATTAAAGGGGACATATTGCTCATGACCTGGAtcttttcggggggggggggggggtaaagagcAGAGGTATGAGGTAAAGAGGCCTTTCAGAGACGATTCAAAACATACGTGCATCACAAGGACACAGCGACACAGGACATTTGCTCAACAATTAGTAGCACATCTCTGGCCGTTGCAGTGAAGGAAGAGGAactagcttttttttttaaaggcccagtacagtcaaaaacaagatttttctgtgttttatatatatatttccacactgaggttggaataatactgtgaaattgtgaaaatgctgATAATGCCCTTTAAGTATTAGAGCGgtttaattaattaaattaattaaaaagACTGCCTAcaatttctgcctgttttggtgcgatggagttttggcctgcctggtgatgtCAACGGGCGGCAagttagttaatagaccaataagagtttccaaacctctctgccaataacagcgaGTTTTCCCCGCATCACtcaaaccactcccagacagtcctagcaagaTTCTTGCTTAAAAAAACCTCTCTTTGCTAATactctatttttgtttattttttgaaAACTAGCTGGTGGTTGAAAAATAACCACAAAAGGTACttaaattgttacccagaaattatttgattttGAGATTTTTAAAAAAGaaggctgcattggacctttaagagtTCAAATGAAAGACTAAAAACAAATCAAATACATCCCCGCAGTTTCATGGAGGGAGAACAAGAACTAGACAGTGAAGGAAGAAGAGTTGCACAGGCATCACATTTTTAACCAGTATATTGCTATACGCATCATTTCCATAGCAATAGAACAGAGGTTCACAATAATAACACCTTGATAATCGAACGCTACAGAAATACCGAAAGAGCCCGACAAGAAAGATTCCACAACAAAGCTGGAATACAACAGAATACAACCCATCattttatacaaataaaaaaaaatacattgataAAATGAAAGTACAAAAACATTGCAATATTATACCCAGCAATTGGTGTGTGCGAAAcacgtttttaaaaatgtttcccCCTTTTCCTTTGTTGTTGCTCAAAGAAATTTGTGAGAAAAACACACAAGGACATCATCTTTGGTGCAGATTCCACAGCAATCTCATTTATGACATTTATCGAGCAGTGTCACACAATCTCCTTACTCTAGACATccactatatacacacaaaagtatgtggacatcacttcaaattagtggattcgggctATTTCATCCAAACCAGTTCCTTACAGGCgtataaaatcgaacacacagccatgcattctCAATAGAcaaaaacattgacagtagaatggccttattcaagagctcagtgactttcaacgtggcaccgtcatagcatGCCACCTTTCAAACATGTCAGTAcgtcaaatttcttccctgctagagcttccccggtcaactgtaagtgctgtcatTGTGAAGTGGGAATATCTGAGCAACAACAACTGcgaacacaagctcacagaacgggactgtcctcggttacaacactcactaccacgttccaaactgcctctagaagcaacgtcaacacaataacTTTGTTGgggggtttccatggccgaacagccgcatacaagcctaacatcaccatgCGCAACACCAAGCGTCAGATGGAGTGGAGTAacgctcgccgccattggactggatcagtggaaactcgttctctggagtgatgaatcacgcttcaccatctgccaGTCCAATGAACAAATCTGGGTATGGTGGATGCCAGGAgtacgctacctgccccaatgcatagtgccaactgtaaagtttgatggaggaggaataatggtctggggctgtttttcatggttcaagctaggtcccttagttccagacttccagtgaagggaaatcttaacgctacagcatacaatgacaataTAGATGagtctgtgtttccaactttgtggcaacagtttggggaaggacctttcctgtttcagcatcacaatacccccatgcacaaagcgaggtctatacagaaatggtttgttgagatcggtatggaagaacttgaccggCCTGCACAGatccttgacctcaaccccatcaaacacctttgggctgaattggaatgccgactgcgagccaggcctaatcgcccaacatcagtgcccaacctcactaatgctcttgtggctgaatggaagaaagtccttgcagcaatgttccaacatctagttgaaagccttcccaaaagagtggaggctgttatagcagcaaaggggggacaaactccatattaatgcccatgattttgaaatgagatgttcgccgagcagttgtccacatacttttggtcatggagtgtacacacaacacacacactgctgggaCTCCACGCACCTTCCCCTGCTGTTTTGAACCAAATATATCAAATATAAAAATACACCAACTTAAAGAATACCTCATAATAATCATTCCTTTGCAGTGTGTCCGTTTACATTGTGGTTTGTCACTGGCCATGTACAATGCTGATATTAGAGGTATATGACCAGCCTATAAGGGAGAGCACACAGATAATACATTAGAAAGTTATCATTACTGGCATCCAGAGTTTATCATGTTGTAGAAATAGTTGAAATAGAAAAGATGAACACATGGGAGAGGGTGGGGAAGAGGGCTTACAGAACACCCAGTGAATCGGACCAATAGGACTTGGATTGAGAAAACACGGATTGGTCATTGAGTGGGCGGGTGGTACCAAACTCAACTTTGTAAAATCTCTCATGCGTTTCTTTGTGTTCCCTTGGAAGTTTACTCACACAATGAGCAATCAACAATCGTGTTGCTTACAAGAGTTGTTTAAATGACGACATAAGCTCTTGGAGACATGCATTTCCCAGCTCTCTATGAATTACATGACATATGACCTACTTTACACCTTCATAACAACCCCAGATTGACATAAGATGTGTTATGTCACCAGACTTGTATTGTGTGGCATGACCATGACCTATCGATCCGAGGTTGTTGACATAAGCATTTATAAATGCCCAGGGCATGGATGCATAATGTCCATGAGGATCATGCTTATGAAGGAGGTGTAATGTAGCCCCTATGCAGTGTCATTGATAGAAATACTGAATTCTTGTCATTATTCAGTTGCAGTATAATCCATCTCTCAAACACAAAAAAGTCAAAAGTTGCAATACTAAAAAAAACAAGCCCCCTCCaggaaacaaaacaaacacattaaagagagaaaCATGATTCAAAGCTCCATGTGCAGggggaattattattatttttttttaatcgctCGAGCAGATCCCTGGTGATTCTCTACCGAATCAACTCGCCGAACTCTGACACCATTCCCATGCAAAGCCATGGCTTACTTGAACAAGAACAAACTTGCAGCACATCCACAACTCTcctcaaccccccccctcccaggtCAAAGGACTCGAGGGGAATCGTCGACAGCCTCCACCAGGGCCCAATGTTCAAGTACGGAATGGGAATGTAATTGAATGACCAAAAATgccaacaaataaataaataagatgtAACGGGACCAAAAGAAGAGATTTCAAATGAATAATGATTGAATGACTGTAACCAACATTTTGGATTTGCATTTAGCATAACATCATACGTGCTTATAATAAAGGGGCTATATTGTAATGAAATAAGACATTGAAAAGGTAAAATTCTACAATAGGTTAAAAAGTCACATGGCATTTGGGTTTACACTAGTGTAATTACATTAACTGAATAGTAGAAATAGAATCGTTGTACATTCTACATTCTGGTTACAGAAATAAGTATGTAGTAACTATATGGTGTATGGACAACTTCATGTAAAGTCTTGCAAATAAAACAACAATGACTAAAAAGGATTCCAGTTAAAAATGGCAAAACTTCGTGATTAGATGGGCAGATGGAACATCGAGTACCatcgattaaaaaaaaaaagaacgttTTATagagtgatgacatcacagccaTGAGGAACGAGAGCAGAGTGATTGGGACGGAGGGAGGTGGCCAGAACCACATGCGTTATTTCTCACAAACACTCAagacagacatatacacacacacacacacacacacgcagacacaaagtCTCAGTGGCTGGTAATTTTGAAGAGCCTCTTTCTCAGGCCTAGAGAGGGGGTTGGGGTGCAGTGGGTTGGGTTATGAGGTTCCCCTAACCCCCTAATCAGGAGTTGAGGGAGAACTGGTCCTGCTCGATGGGCTTCTTCACCCAGGCCCCCAGGCCCGACTTGTGGAAGACCTTGATGAGAGTCTGCTTGGCATTGTGGTATTCCACCGCCGCCTGCTTGGCGTCGTGGTACGAGCTGGGCTTGGACACCTTGATCCTCAGTGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298039 lncRNA upstream 3935 44516200 ~ 44516484 (+) True G262035
TU298032 lncRNA upstream 12328 44507752 ~ 44508091 (+) True G262028
TU298028 lncRNA upstream 19822 44500343 ~ 44500597 (+) True G262024
TU298020 lncRNA upstream 28437 44491656 ~ 44491982 (+) True G262016
TU297974 lncRNA upstream 97335 44422491 ~ 44423084 (+) True G261972
TU298275 lncRNA downstream 325971 44851379 ~ 44892059 (+) True G262259
TU298341 lncRNA downstream 433279 44958687 ~ 44959175 (+) True G262313
TU298803 lncRNA downstream 574631 45100039 ~ 45102438 (+) True G262735
TU298877 lncRNA downstream 672942 45198350 ~ 45198602 (+) True G262807
TU298884 lncRNA downstream 701765 45227173 ~ 45227384 (+) True G262814
XM_021596952.2 mRNA upstream 45147 44470171 ~ 44475272 (+) False LOC110520002
XM_021596954.2 mRNA upstream 45147 44470245 ~ 44475272 (+) True LOC110520002
XM_036974162.1 mRNA upstream 312314 44075824 ~ 44208105 (+) False LOC110504116
XM_036974170.1 mRNA upstream 312314 44075824 ~ 44208105 (+) False LOC110504116
XM_036974177.1 mRNA upstream 328763 44075822 ~ 44191656 (+) False LOC110504116
XR_005051414.1 mRNA downstream 309103 44834511 ~ 44834565 (+) True LOC118964364
NM_001124435.1 mRNA downstream 353252 44878660 ~ 44903676 (+) True cd18
XM_021596956.2 mRNA downstream 378626 44904034 ~ 44930884 (+) False LOC110520005
XM_021596959.2 mRNA downstream 379070 44904478 ~ 44930884 (+) False LOC110520005
XM_021596957.2 mRNA downstream 379104 44904512 ~ 44930884 (+) False LOC110520005
TU297744 other upstream 267868 44252069 ~ 44252551 (+) True G261749
TU292451 other upstream 4068239 40440069 ~ 40452180 (+) False LOC110519969
TU292452 other upstream 4068239 40440069 ~ 40452180 (+) True LOC110519969
TU290915 other upstream 4852331 39659059 ~ 39668088 (+) True LOC110519960
TU290310 other upstream 5675863 38843510 ~ 38844556 (+) True G254816
TU299672 other downstream 1313513 45838921 ~ 45839480 (+) True G263547
TU299841 other downstream 1408711 45934119 ~ 45934418 (+) True G263710
TU299866 other downstream 1550076 46075484 ~ 46079425 (+) True G263733
TU299995 other downstream 1658726 46184134 ~ 46184804 (+) True G263859
TU300303 other downstream 2305600 46831008 ~ 46832134 (+) False LOC110520046

Expression Profile