RNA id: TU298376


Basic Information

Item Value
RNA id TU298376
length 1410
lncRNA type intronic
GC content 0.42
exon number 2
gene id G262342
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 44663905 ~ 44665382 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcctctttGTCCAACATGTCCAGACCTAGTCAAAAAACAGTTGGATCTCATATCAAAGTGCTGTAGGTTTTGGATCAGCGACTGTATGGCCAGCGATTTGAAATAACAACCCACTCATTCTGCTGGAACCCAAATAGAGGCTCATATCTATCACTGTTAGTGCCGAACATGACCCATTGGAAAGGTTTTGTTCAATGTCATTAGTACACTTTTCACGCTATCGACCTGAACCAAACTGCGCTGTCTCGGAACACTGTTCCGGTATTTACGGTGGAtgcgtaaccaggccagctcGGTACAGCTAGTGTGCCTTGGCTCGGTTTGGCTCAGTGTCAAAAGCCCCTCAGTCAACAGCAAATATATGGGCTTGCTTGTCTGCCTTGAGCAGTGATGTAATACCAGTGTTGGCAAAAGCCCAATAGACCAAGAAAGActgaagaaaacagcaaacaacaatgcaaaaaaaaaaaaaaaaaatttaaataaagAAACAAAAAATTATTAGATCAAAGGACAACAAAAATCACAACGGcgatgccaactgtatatgtttgtgtgcatgtctggcactattacatgaatgtgtgtgttcatgtatgcGTTTATTTcaatgagagagtgtgtgtgtgtgtgtgtgtgcacgtgtACAGACACCTGCACcacatcagcctcaggcaaaatGGCATTAGTTGAAAAAACACTGCCACTCAATGTCAGTGagatgttttatttgtattttttgtgtgttgctgccttgctaagTTTTCTTAGGTCtctatgttgtgttgtctctcttgttgtgatgtgtgttttgtcctatatttatatggtattcatttatttaattttatcCCAGGACCCCGttcccacaggaggccttttggtaggctgtcattgtaaataagaatttgttcttaactgacttgcctagttaaataaaaatcacTCTCCTTGCTCAAAAATCACTCTCCTtgctcaaatagcccttacacagcctggaggtgcattttgggtcattgtcctatttaaaaacaaatgatagtcccactaagtttaaaccagatgggatagcgtatccctgcagaatgctgtggtagccatgctggtttagtgtgccttgaattctaattaaatcagtgtcaccagcaaagcaccatcacaccacctcctccgtgcttcacggtgggaaccacacatgcagagatcatccgttcacctactctgcatctcacaaagacatggaggttggTACAAAAAATATCCAATTTGGAGATCAAagtacagatttccacaggtctaatgtccattgctcgtgtttcttggcccaactctcttcttcctattggtgtccttttagaagtggtttctttgcatgaaatcaggccttcatggtcgaattgctgcagtccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298444 lncRNA downstream 20257 44566323 ~ 44643648 (-) True G262406
TU298411 lncRNA downstream 160839 44502860 ~ 44503066 (-) True G262377
TU298402 lncRNA downstream 170693 44492971 ~ 44493212 (-) True G262368
TU298356 lncRNA downstream 240828 44422491 ~ 44423077 (-) True G262326
TU298353 lncRNA downstream 243682 44418079 ~ 44420223 (-) False G262325
TU298621 lncRNA upstream 150045 44815427 ~ 44815652 (-) True G262575
TU298624 lncRNA upstream 156622 44822004 ~ 44822238 (-) True G262578
TU298638 lncRNA upstream 171595 44836977 ~ 44837257 (-) True G262587
TU298643 lncRNA upstream 176591 44841973 ~ 44842205 (-) True G262592
TU298634 lncRNA upstream 227026 44892408 ~ 44903669 (-) False G262585
XM_036974216.1 mRNA downstream 77466 44523710 ~ 44586439 (-) False LOC110520004
XM_036974212.1 mRNA downstream 77665 44523710 ~ 44586240 (-) False LOC110520004
XM_036974211.1 mRNA downstream 77668 44523710 ~ 44586237 (-) False LOC110520004
XM_036974208.1 mRNA downstream 195194 44425368 ~ 44468711 (-) False LOC110520000
XR_005045980.1 mRNA upstream 273353 44938735 ~ 44940312 (-) True LOC118956426
XM_021596960.2 mRNA upstream 275977 44941359 ~ 44957332 (-) False LOC110520006
XM_021596961.2 mRNA upstream 275977 44941359 ~ 44957343 (-) True LOC110520006
LOC110520007 mRNA upstream 279339 44944721 ~ 44947818 (-) True LOC110520007
XM_021596963.2 mRNA upstream 299030 44964412 ~ 44986253 (-) False LOC110520009
TU297567 other downstream 632400 43989524 ~ 44031505 (-) True G261580
TU295461 other downstream 2336725 42305328 ~ 42327180 (-) False G259576
TU295450 other downstream 2338127 42322739 ~ 42325778 (-) True G259576
TU295485 other downstream 2357898 42298242 ~ 42306007 (-) True col6a3
TU295484 other downstream 2360260 42298242 ~ 42303645 (-) False col6a3
TU299080 other upstream 344790 45010172 ~ 45012249 (-) True G262993
TU299078 other upstream 433958 45099340 ~ 45104263 (-) True LOC110520012
TU299385 other upstream 870950 45536332 ~ 45537542 (-) True G263274
TU302286 other upstream 2933836 47599218 ~ 47599815 (-) True G265988
TU302595 other upstream 3366665 48032047 ~ 48033302 (-) True LOC110505248

Expression Profile