RNA id: TU298634


Basic Information

Item Value
RNA id TU298634
length 6156
lncRNA type antisense_over
GC content 0.41
exon number 5
gene id G262585
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 44892408 ~ 44903669 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGAGAGTTTTATTTGTAATGAAAAATATCAGTGATCGTTTGCTGCTTTACACAATATTTCCTCATAGGATATGTAGAGTCATGGTACATTGTAGATTTGTAAATAAAAGCTACAAAAATAATTGCTGTAAGAAATATCATtgagttacacaatacattatttgaaACTTTAGGATGATTTGGATATAAAGCGTGAATTATCCTAATATAGGTACCATTaacttgcattggatttgtgacacaaatgctaaaaagttagcatttgaaacagtggcaaggtaaacaaaaccaaataATGGGTTGCTGTCATACCTGGTCCGtaaactgcttacagggtaagaaaATCTTTAATAAATTATCCCCAAATAGCAGGAACAGCACCATTTAGTGGTCAGGATGTAGGACCCAACAACTTCAATGACTAATTCCTCTGAACAGGGGAAAAAAACCTCACTCaattcactgagaatacattaCATTGGTTGAAGGAACAAAATTAATTAATAGGGGGGGGTCCGTGGATGGCTTTTGACCACTTCTTttgattcctcatgtcttaccCATTGTTATCaaaagtttggtccaaatcggatATTAGGTACTATAATtgttgaatattatatgaatcctataaattaaaatggccaatttccGTGCAAtaaattagcttaatttctcagagatcaaatatTGTtccaacaaaataatgttgcaggaatgctaacGTTAACAGAAACCATTTCAGAATAATCTGAGACGGTGGGTGTCAAAAACCTCTTACTTGGTCTTTTTTTAGGTGGAAGGACCCTGTAGCAACATTGCAGCAGTTTTTTTCCAATCAGTGCATGATCATTCTTGAATTCAGTCTTGGAACACATAAAAAAATACTATTTGTAAACCAACTTataaattgtggagaaaaaaaagcacattaaaacagaaacaataaaTGTACATGTATTTGAATCCAACTTGATTGTCTGGGCTGACTGATGTTGATCTTATTCTCCAGTGAAGGTAGGGTTAGCCACGGTGGTGGTCGCGTTCATGAATAGTGGATTGTCTCCCGGGGACCACTTTCCTTTCTTCTGCTCATTCTCAAACCTGCGGAACTCCTTCACGTCTCTCATGTAGAGGATGGCTTTGATGATGAGCAGGATCAGTAAGCCGATCAGGGCCACGCCCGCAATGGAGCCTCCAATGATGGCGTAGATGTTTGGCAACTCCGGACATTCTAAAACAATTATGACAGACATTAACAACCATACATTTTTAGGCCGTCCTGGAGGCTGTAGCATGTTACGTTTACTGTGAAAACATTTGGTAGCAAACATCTCTCGGACACTGTGATTCAGATGCTTTCAATGTGACTTGGAGGCTTTATCTTGATGCCCATCAAACAACGTGGTCGGTCAACTAAAACACCCAGCAAACATGATCTGTTTTCTGTGGGCTATGAAGGTAACATGGGCATACTTTTTAGTTGCACAAGACATACGTCTCTTACCTCTGGTCTTTAGTATCTGGGCGGAGTAGTTGTCCTCTCCATCCAACTGTTTAATGATAAAGAACACCCGGCAGTTCTCCACATCCCTCACGTCACAAGGCTTACCAGGTGGCAATGTCTCCACCATCTCAAATTCATTAATACTCTTACAGGTCTGGGAGCAGTTCTTGCTGAACGGGCCTGTCTGAAAGCCCAGACACTCGATGCACTTCCTGAAAATAGAAGAACGAGGTAGAGAGTGGAAAACTTCCTTGCTCAACATTTTGTCTTCTCCCTTTAAGGACTTCAACACATGCTTTGGTTCCAAAACCCCTCGCGTTGAGTAAGATGGCAACACGCAGAAATGATATTTTTAAGTGCTACATTCTATTCTACCAGTCATCCTTTACGGTCAATGGTAACCGTCTTTGTTTGTCCTATGGTTGTGATGCAATTTAACATGTACACGATGGATCCAACAACATTACCTAAAGGGGCCAGTGAATACAGTGGTTGAGTGAGTGAAAAAGGTGGGCCCAGGCCGTCTTACCCCTTGGTTATACAGGGAGTCTGGCAGGCGGGACAGGTCAGACAGTAGGGCCGCTGGTAGCCCTCGATACACTTGCACTGGTTACACTGGCATGTGCCCCTGCCGCTGCACACGCTCCCGCTTGGTGTGCGACACTGCTCATCCGACTTCTTGCATTGGCAGGCGGTGCCTTCGTACTCGGGGTTGCATTCGCAAATTTTACAACGGCATTTCCCGTTCccttcTCCACACAGTTTGTTCTGAAACTTCTCGCAGCTCTCGTTTTCACACTCGCAGTGCGTGCCGTAGTAGGTGCTGCCGCCTTGTTGGGCATAGCACTGgcaaatgccacacacacagtcccctcGTCCTTCGCACTCCGTGCCGTTGTCCTTCCGGCATGCCGCCCTCAGAGAGCTCTCGTCCTTCTCCCCGATGGCGCACTCGCACTTCTGACCCACGAAGCCGGCATTGCAACTGCACAGAGTTGGGAGGAAAAAGCCTACTGTACTGATTGCTTGTGAAGACTTTACATTTACCACCCCCCAAAATTGTGGTGTCTTTTTGTTCCCCCTGAGTACAGAGaatagaaatacagtatagaAAATAGAATGAAATAGATGGTTCATAACAATCCATGTTTCTCAGTTTCTTTGTTTTTCAGGTGACTCAATGCACTTCTAGGGGGATGAAGGGGAAATCATGCATCATATATTGGATTAAATATTGACTATATCAACATAAGTTGGAATATATTGGGGAAACAAAAGCACATGCTATTTGTTGTATATCCCAACCAATGCCCGCCTTACCTGCACATGCCACATTTGACTTTACCCTTCCCGTCGCAGTCCTTGTGATTCTCCTCCTTGGGGTCATCACATTCACACTCGCAGCGAGTCGACAAGCTCACCTTCAGCTTGTCTTTTATGCCCAATGGGCCAATCAGAAAAGACCTCTCCCTGTCTATACATTCATCTGCCGTCACTGTTACGTTGAAAGACACCTGAGAGGAATTCAGGAGACGCAATGAGTAAATTTGTGGTATGTGTTTGGATGTTTTTTTTGCTATTTATTATCATTTAACTAAATGGatACTGCaattgatgaatttatgaaattgcttcttccaattattcataaacatgcacctgttaagaaactgactgttggAACTGTTAAGGCTcaatggattgatgaggaattgaaaaactgtgtggttgaaagagatggggcaaaaggagtggctaataagtctggctgcacatctgactggctgacttactgcaaattgaggaattatgtgactaaactcaacaaaaataaacagaaaCTGTATTAtaaagccaagatcaatgatatgaagaatgatggaaaaaaactttgaagtactttaaattaaattatgggcagaaaaaCAAATTCAattccatctttcatcgaatcagatggcttattcaccAATTATTTTAGCGATTACTTCATTACATGTAGCAAATTgtgcaaacttaggcaggaaatgacaacaacgaacagtgagccattgtattcatgcataaaaaaagaAAAGCATCGCAACTATGAAAGAAAAGTTTTGCAAGTTtcaattttgtaaagttagtgtgggagatgTGAAAAAGGATTGTTATCGATCGacaatgacaaacctcctggcattgataacatagatggaaagctactgaggatggtagctgactctatagccactcatATCTGTCATATCATTCATCTGGGCCTacaggaaagtctttgtcctcagacctggagggaagccaaagtaatttcgctacccaagagtggtaaagcggcctttattGGTTgaaacagcagacctatcagttTGCCGCCAGCTCTGAGCAAACTGTTGGgatattgcgtggagccccagatcgagggagattatcagtggtcttgtatgtcttccatttcctaataattgctcccacagttgatttcttcaaaccaagctgcttacctattgcagattcagtcttcccagcctggtgcaggtctacaattttgtttctggtgtcctttgacagctatttggtcttggccatagtggagtttggagtgtgactgtttgaggttgtggacaggtgtcttttatactgataacaagttcaaacaggtgccattaattcAGGTAacgaggaagacagaggagcctcttaaagacgaagttacaggtctgtgagagccagaaatcttgcttgtttgtaggtgaccaaatacttattttccaccataatttgcaaataaattcattaaaaatcctacaatgtgattttctggattttcttcttctcattttgtctgtcatagttgaagtgtacctatgatgaaaattacaggcctctctcatctttttaagtgggagaacttgcacaattggtagctgactaaatactttttgccccactgtatctaatagaactcaacgggttttctttaatggtatcttctctaatgtcaaacatgtaaagtgtggtgtaccacagggcagatttctaggccctctactcttttatATGTTTACTAATGAACTGCCATatgcattaaacaaagcatgtgtgttcatGTATGCTGAGGATTCAACCATaaacgcatcagcaaccacagctaatgaagtcactgaaacccttaacaaagagttgcagtctgttttggaatgcggcgggggggggggggggggggggggggggggggtacatacCATAAATGTACATAAGTGTTTACAAAGAAATGAAATACATATTACTGTTTTATCAATAGTTGATTAATACTTCAGTTATTATCAAGTGTTACCATATAAATATTTGGTATGTGATAGTCTTTTACTTCTGATCTCTTACCAAGTCTCCTACTTTGACGTTATCACAGACCCCCTTGTCCCCTGCGGGTCCCCCTCCAGGACAGAGTGGAGTGTAAGTGACTCTCACATTGTCAGGGAGAGCATCATGAGTCACTGTCACTTTGGAGGAGAGCCTCTGTGTCAGACACAAAACAGTCTCAGAGTTGACACCAATGCTAAATCAccagaaaaaaaacatcacaaGCAAATCCAAACTGATACATTATTCCTAGAGATACTAGAGGTTTATGATAAAAATCAAGCAAGGTTCTACACATTAAACACATAATTATTGGAGTACcatcttttttttaaagagattTGTTAAATGAATAAGAAAAGATTGTAAATATCTGAATAAGAATTAAACAAATATTGTAAATGTCTTACATTGTAGGCAGCTTGGATCAATTCAACAACATTTTTGGAGTCCTCTGACAATACTCCCACCTCAGACTTGGGGATCATTCTACTGAGTTCCTGGAAGATAGTtaggtaagacaacaacacatcacaatcgAATCAAGTACATTTCCCCTCAACAGagttttatgggggggggggtcaggtgtATTGTGAGAGTTATTTAGGATACTCTTCATTATTATGTGGCAGTATTAATAAGTTACTGCATTACATATGTTGGCGTTTATAACAGTAGAAAAACTgaggaagaaaaaaagaaagaatgaTCGAAATAAAGAGAGTCCACTTACCCTGTATACATTCTCCATGTTCTTTGTCACAGCAAAGATTGGCTGAATGTTGTTCTTCTCTAACTGCGAAGCCACTTGACCAACAGATGGGTAGTCCTACATACAGAGACACTTAACTTGTACAACCTCAAGAATGTAATTGTTTAGGGCCAAAAGGGTTGGAATATACAGGCTTTAGTTCAGTCCCAGTTCATTCATTACATATTTTTCATATTCTCTCATGGTATTTTTCATATCCAGTACAGTATATCAAAGTCTTGGTGAGGACCAATCATATTGATCTGAATGTGTCCCATGTCATCATCACATACCATGTCATTGCTCTTAGTGTACAGCTTGTTGTCCATGTAACATCTCTCGTCGTTGGGCTCCAGTATGCCAGCCAGCTTGCCATCCCCTGCCATGTGGAAGCCATCGTCGGTGGTCAGGACGATTAGCCGAGTGCTGCTATTCCTCCAGCCAATCCTGTCCTGTGGAAAACAATTGAAGGCTTCATGTAAAATGGATGGAAAAGATGCGAAAAAGTTTACATCCCACATTGGAGTTTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298643 lncRNA downstream 50203 44841973 ~ 44842205 (-) True G262592
TU298638 lncRNA downstream 55151 44836977 ~ 44837257 (-) True G262587
TU298624 lncRNA downstream 70170 44822004 ~ 44822238 (-) True G262578
TU298621 lncRNA downstream 76756 44815427 ~ 44815652 (-) True G262575
TU298376 lncRNA downstream 227026 44663905 ~ 44665382 (-) True G262342
TU298688 lncRNA upstream 4658 44908327 ~ 44908593 (-) True G262630
TU298725 lncRNA upstream 56710 44960379 ~ 44960586 (-) True G262667
TU298726 lncRNA upstream 56962 44960631 ~ 44960857 (-) True G262668
TU299076 lncRNA upstream 96873 45000542 ~ 45001544 (-) True G262989
TU299093 lncRNA upstream 131130 45034799 ~ 45035035 (-) True G263006
XM_036974213.1 mRNA downstream 173930 44523710 ~ 44718478 (-) False LOC110520004
XM_036974214.1 mRNA downstream 173930 44523710 ~ 44718478 (-) False LOC110520004
XM_036974215.1 mRNA downstream 173930 44523710 ~ 44718478 (-) True LOC110520004
XM_036974216.1 mRNA downstream 305969 44523710 ~ 44586439 (-) False LOC110520004
XM_036974212.1 mRNA downstream 306168 44523710 ~ 44586240 (-) False LOC110520004
XR_005045980.1 mRNA upstream 35066 44938735 ~ 44940312 (-) True LOC118956426
XM_021596960.2 mRNA upstream 37690 44941359 ~ 44957332 (-) False LOC110520006
XM_021596961.2 mRNA upstream 37690 44941359 ~ 44957343 (-) True LOC110520006
LOC110520007 mRNA upstream 41052 44944721 ~ 44947818 (-) True LOC110520007
XM_021596963.2 mRNA upstream 60743 44964412 ~ 44986253 (-) False LOC110520009
TU297567 other downstream 860903 43989524 ~ 44031505 (-) True G261580
TU295461 other downstream 2565228 42305328 ~ 42327180 (-) False G259576
TU295450 other downstream 2566630 42322739 ~ 42325778 (-) True G259576
TU295485 other downstream 2586401 42298242 ~ 42306007 (-) True col6a3
TU295484 other downstream 2588763 42298242 ~ 42303645 (-) False col6a3
TU299080 other upstream 106503 45010172 ~ 45012249 (-) True G262993
TU299078 other upstream 195671 45099340 ~ 45104263 (-) True LOC110520012
TU299385 other upstream 632663 45536332 ~ 45537542 (-) True G263274
TU302286 other upstream 2695549 47599218 ~ 47599815 (-) True G265988
TU302595 other upstream 3128378 48032047 ~ 48033302 (-) True LOC110505248

Expression Profile