RNA id: TCONS_00029349


Basic Information

Item Value
RNA id TCONS_00029349
length 3723
RNA type mRNA
GC content 0.47
exon number 18
gene id XLOC_014874
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 30408317 ~ 30422239 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAcgaaaataattgtattatagtCAGGCCAACACTGTATTGCTCTGTTGACAAGTTCTCAATCAATCCTTGTAAGCAGCCATGGCCGTGGGCCCAGTGGACCCCAGAGAGGTGTTGAAAGGAGTTGAAGCTCTGCTGGGGAAGGATGGAGAACTACGTAGTCTTGAGGGAGTCGCTAAAGTCTTCAGTCTGATGAAGGCCTCACATAAAATGGTCAGCAGATGCATGTATCTGAACATATTACTTCAGACAAAATCACATGATGTGCTAAATCGATTCATTCGAGTTGGAGGCTACAAGTTGTTGAACTCTTGGCTCACCTACTCGAAGACCACCACCAACACGCCTCTGTTGCAGCTCATTCTGCTGACCCTGCAGAAGCTTCCTCTTACTGTGGACCACCTCAAACAGAATAACACTGCCAAGCTGGTGAAACATCTGAGCAAGAGCGGAGAGACAGAAGAGCTGAGGAAGTTGGCATCTGTGCTGGTGGATGGCTGGATGGCTATTATTCGCTCTCAGAGCGTCTCCAGTGGAGCATCGCCTAATGACAAGAAACGGAAAAAGGAGGATGGAAAAGTGCGTCCAGAGGTGAAGCCAAAGGAAAAGGCAGCtgaggaggagaagaagaaggACAAACCAAAAGCTTATGCTCCAAGTCATGCTAAGATCCGCTCTACAGGTTTGGAGGTGGAGAGTCCGGCTCCAGTTCCTGTGAAGAAGCCACCCGTTGCACCCCAACTTGGAGACAAATACAACATCAAGCCAGCTGTACTTAAAAGACCAAGcACATCTTTGACTGACGCACCACCAGTGGAAAAGAAGTACAAGCCACTTAACACCACCCCCAACTCAACCAAAGAGATCAAAGTCAAACTCATACCCCCACAGCCGATGGAGGCCACTGGATTTTTGGACGCCCTCAACTCTGCTCCAGTGCCTGGCATCAAGATCAAGAAAAAGAAACCAAAAGCAGTTTCACCCACCAGTAATAAGCCCTGTCCATTTGACAGCAGGCCGCAGTCATTTTCAGGCGCACAGGCCAAACCATCTTCCCCTGAAACGCCTTCATCTCAAACCCCTCCTCATGAGAATCAAGAACTGGAGCAGCCTGGCACACCCGTGCCCACCGAGGAGCCTGAAGCCATGGAAACCGGTGATAAACCCAATGCTCTGGCTGAACCTCGCAGCGAGGAGGAGACTCTGACTAAGAAaggaaagaagaagaaaagcGTGCGGTGGGCGGAAGAGGATCATCTCAAAGAGTACTTCTATTTCGATCTGGATGAAACTGAGAGagTGAATGTGAACAAAATTAAGGACTTTGGTGAGGCGGCTAAGCGGGAGCTGATGATGGACAGGCAGACGTTTGAAATGGCTCGTCGTCTTTCTCATGACACCATGGAGGAGAGGGTGCCCTGGACCCCACCGCGACCCTTGACCCTATTAGGCTGCCTGGTCACTGCAGGTGCCAGCAGCCGAGAGAAGATGATCCAGAGAGACCGAGAGATGGGCATTCTGCAGGAGATCTTCCTCTGCAAGGAGAGTGTTCCAGACAGTCCTCATGAGCCAGATCCTGAGCCGTATGAGCCCATGCCTCCTCGTCTCATCCCACTGGACGAGGATAGCAGTATAGTAGAGGACATGGATTCCACTGATCCTGCCTCTACTCCCGGCTCTAATGAAGGCTCCAAGCTGCCTCCTGTATTAGCCAACCTCATGGGCAGCCTGGGCAACAGCGGCCGCAGCCCGCAGGCACAGGGCAATGCCCCAcaagccaataataataataataacccagCTGTTAATGTGCAGGAACTACTCTCATCTATCATGGGTGCACACGGATCTAATCAGTCTCCAGAAGACCTGATCAAACAGCCGGATTTCTCTGATAAGATCAAGCAGCTTTTGGGTTCTCTGCAGCAAAACCAGAATCAGAACGCGCCTCCCAATGCTCCACCAATGAACCCTGGTCTCCTTGGTCATGGTCCCGGCATGAATATGAACAACATGAACAACATGCAGATGCCCATGAATGGTGGTTTCCCTCCAAACAAGCCTCCTGGACCACATTTCAACCATCCTCCACCTCCACATGGTCATGGCCCACCCTTCAATGCCGGAGGCCCTGGGCCTGGCCCTGGCCCTCGTATGATGGGTCCTCCACCCGGCCCACAGGGACGAGGAGCAGACAATGGAAACTACTGGGGCGATGACTCAATGAGAGGAGGCCCACACCGGGGAGGCTTTCACCGGGGCCGAGGAAGAGGAGTAGATCCAGGCTTCAGAGGGCGAGGGGGGCGCGGAGGACCACGTGGGGGACATAACAACATGGGTGaTATGTCAAATAGGCCAGTGTGTCGGCATTTCATGATGAAGGGAAATTGTCGTTATGAAAATAACTGTGCGTTTTATCACCCTGGTGTAAACGGACCACCTCTACCTCCTCAACACGGACACTAGCATGCTGTAAAGCTGCCGTTGCTAGAACTCGCCACTAGTGGGCAACAGGACTCAAACTGAGCCTCGTTTACAGTAGCTGAACCTGATTAACAGGAACAGGATGACGTGGAGGGGATGCTTTTTTTTGCGTCTGTGACTGCACAATCCCATCTGCTTCACCAAAATCCTCTCAGTTTTACACTACTTTTCTGACCTGGAAAGTTAGGAGAAAAATCTGAGATCCTCTATGAAGAGTGACTAAACCCAATACTAGGCTTTGGGGCCTCCGTGTAAATAGTGATTCCTGAAGATGgtgatgtatatttttttattgtgattcCGTGTACCACTGACCTGACTGCTAAAGATTGTACTACGTTGCTCTGTAACCACTATGACTAAGGTGTAAATAATCGTCTTCAGACAGTGATGTGCAGTTACTTAAGCTTTCCCTGGTGCCCGAAGCCCTAAGAAACTAGATGTGCAATTTTTCCAAAACAGAATTTGCACATCAATCATTAATGCACCTTGCATTTGCATAATGAAATCGACACTTTCAGAAGTATTCAGTCCCTCTGAAGCGGCCAGAAGATGGCGCACTggttaaagttttaatttaaggTTTCTGTAGGACAAGGAGAAACCAAACTTAAtatgaaatgctttgaaattttcAGATTTTCGGTCAGTCGGCATGAAAAGTGCCTCAGGTTATTTTCACTCACGGTCCCTTTTTTCAATGATTTTCACCTGGGCACAAACTACAATGTTTTTTGAAGTCCCGTTGCTTACTTGAATTGATACTTTGTGATGAAAAGTGATCTTAGcctgcttaaaaaaaaatcagctattGTTCGTGGTAGTGTGACAATCAGGAGAATTAGCTGGGATGATTTCCTACTTGATGTTGATGCTGTTTGATTTGCTGTGCGTTCATGTTCTCATGCTGTCAGAAGCTCGGTCTAGATCAGACTCGTGTGGGTCTGTCCTGCTCTATCAGTGTTTAACTGAGTCTAACCTAGGCTGCAAACCACTATGAAGGCCAAACTTATTCTGGTGTTTTCTGTGAAAACAGTGGCCATTGTCTCTTGTGggactttattttctttttttttttggtttgatcCACTATTTTCCCatgattttattttgatacaagtcagatttttttctattgtttgAGAAATGTCTATGTGTCAGATTGCCgcataaacacaacaaaaggcacattttgaatttttttttctacatgtaaattaataaatgttcagAAATTCA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko01009 Protein phosphatases and associated proteins

ZFIN:

id description
ZDB-GENE-020419-15 Predicted to enable metal ion binding activity and protein phosphatase inhibitor activity. Predicted to be located in nucleus. Orthologous to human PPP1R10 (protein phosphatase 1 regulatory subunit 10).

Ensembl:

ensembl_id ENSDART00000144121

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029342 lncRNA downstream 55778 30347509 ~ 30354355 (-) False XLOC_014872
TCONS_00030291 lncRNA downstream 57997 30347509 ~ 30352136 (-) False XLOC_014872
TCONS_00030290 lncRNA downstream 93990 30312845 ~ 30316143 (-) True XLOC_014871
TCONS_00030289 lncRNA downstream 109399 30271204 ~ 30300734 (-) False XLOC_014870
TCONS_00030292 lncRNA upstream 49368 30469970 ~ 30470501 (-) True XLOC_014876
TCONS_00030293 lncRNA upstream 171717 30592319 ~ 30623732 (-) True XLOC_014879
TCONS_00030294 lncRNA upstream 300410 30721012 ~ 30722504 (-) True XLOC_014880
TCONS_00029791 lncRNA upstream 410588 30831190 ~ 30835097 (-) True XLOC_014883
TCONS_00029371 lncRNA upstream 542121 30962723 ~ 30965661 (-) True XLOC_014885
TCONS_00029346 mRNA downstream 6037 30401544 ~ 30404096 (-) True XLOC_014873
TCONS_00029345 mRNA downstream 6211 30400372 ~ 30403922 (-) False XLOC_014873
TCONS_00029344 mRNA downstream 51074 30350588 ~ 30359059 (-) True XLOC_014872
TCONS_00029340 mRNA downstream 522504 29866489 ~ 29887629 (-) True XLOC_014868
TCONS_00029338 mRNA downstream 556731 29836458 ~ 29853402 (-) True XLOC_014867
TCONS_00029351 mRNA upstream 8311 30428913 ~ 30447637 (-) False XLOC_014875
TCONS_00029353 mRNA upstream 8902 30429504 ~ 30447743 (-) False XLOC_014875
TCONS_00029354 mRNA upstream 21876 30442478 ~ 30447611 (-) True XLOC_014875
TCONS_00029356 mRNA upstream 54679 30475281 ~ 30510259 (-) False XLOC_014877
TCONS_00029355 mRNA upstream 54679 30475281 ~ 30510259 (-) False XLOC_014877
TCONS_00029343 other downstream 59935 30349303 ~ 30350198 (-) False XLOC_014872
TCONS_00029339 other downstream 537018 29861859 ~ 29873115 (-) False XLOC_014868
TCONS_00029333 other downstream 624921 29785095 ~ 29785212 (-) True XLOC_014865
TCONS_00029320 other downstream 1968173 28441841 ~ 28441960 (-) True XLOC_014853
TCONS_00029305 other downstream 2804393 27589335 ~ 27605740 (-) True XLOC_014843
TCONS_00029352 other upstream 8730 30429332 ~ 30431750 (-) False XLOC_014875
TCONS_00029367 other upstream 332207 30752809 ~ 30799963 (-) True XLOC_014881
TCONS_00029373 other upstream 579231 30999833 ~ 31007417 (-) False XLOC_014886
TCONS_00029380 other upstream 658724 31079326 ~ 31081251 (-) False XLOC_014888
TCONS_00029381 other upstream 659576 31080178 ~ 31083973 (-) True XLOC_014888

Expression Profile

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