RNA id: TU299210



Basic Information


Item Value
RNA id TU299210
length 366
lncRNA type read_through
GC content 0.34
exon number 1
gene id G263110
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 45199219 ~ 45199584 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


agacaattgatgtatggatgactcatagtgtagactgggttcgtgcagataaccaacaatttacgacgtttggaatgagactaacgtgaggtaaaataaataaatcattaaatcagaagactattgatcagatatgaaaagatctgaaaggttatattgggaaattataactttgtaatctgaatactttccttggtgccccgacttcctagttaattacagttacatgattattcagtttaatcacgtaatactaattacaggaatctttgataaaaactaagtcttcaatttaatgatggTAAAGACACGACAGTGTACTATACGTAACTATAGTACCCTGATCGGGCTGTTAAGTGAGCTCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU299206 lncRNA downstream 1873 45197003 ~ 45197346 (-) False LOC118956634
TU299126 lncRNA downstream 120382 45078521 ~ 45078837 (-) True G263039
TU299099 lncRNA downstream 158680 45040218 ~ 45040539 (-) True G263012
TU299098 lncRNA downstream 159691 45039251 ~ 45039528 (-) True G263011
TU299093 lncRNA downstream 164184 45034799 ~ 45035035 (-) True G263006
TU299211 lncRNA upstream 146 45199730 ~ 45199996 (-) False LOC118956634
TU299212 lncRNA upstream 506 45200090 ~ 45200378 (-) True LOC118956634
TU299209 lncRNA upstream 14161 45213745 ~ 45214224 (-) True G263109
TU299220 lncRNA upstream 22470 45222054 ~ 45222436 (-) True G263120
TU299219 lncRNA upstream 24488 45224072 ~ 45224612 (-) True G263119
LOC110504133 mRNA downstream 9099 45179364 ~ 45190120 (-) True LOC110504133
XR_002472923.2 mRNA downstream 94933 45099333 ~ 45104286 (-) False LOC110520012
XM_021596962.2 mRNA downstream 212965 44964412 ~ 44986254 (-) True LOC110520009
XM_021596963.2 mRNA downstream 212966 44964412 ~ 44986253 (-) False LOC110520009
LOC110520007 mRNA downstream 251401 44944721 ~ 44947818 (-) True LOC110520007
XM_036974223.1 mRNA upstream 11361 45210945 ~ 45212683 (-) True LOC110520013
LOC110520016 mRNA upstream 28666 45228250 ~ 45235027 (-) True LOC110520016
XM_021596974.2 mRNA upstream 36916 45236500 ~ 45243387 (-) False si:ch211-136m16.8
XM_021596977.2 mRNA upstream 102821 45302405 ~ 45327280 (-) False LOC110520019
XM_021596978.2 mRNA upstream 102821 45302405 ~ 45327280 (-) True LOC110520019
TU299078 other downstream 94956 45099340 ~ 45104263 (-) True LOC110520012
TU299080 other downstream 186970 45010172 ~ 45012249 (-) True G262993
TU297567 other downstream 1167714 43989524 ~ 44031505 (-) True G261580
TU295461 other downstream 2872039 42305328 ~ 42327180 (-) False G259576
TU299385 other upstream 336748 45536332 ~ 45537542 (-) True G263274
TU302286 other upstream 2399634 47599218 ~ 47599815 (-) True G265988
TU302595 other upstream 2832463 48032047 ~ 48033302 (-) True LOC110505248
TU304852 other upstream 4295893 49495477 ~ 49495803 (-) True G268310
TU304858 other upstream 4302832 49502416 ~ 49502971 (-) True LOC118944672

Expression Profile