RNA id: TU299209


Basic Information

Item Value
RNA id TU299209
length 480
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G263109
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 45213745 ~ 45214224 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACTTTGAGCTGGACGTTATCCGGCTTTGAAATTCAACTCAACTGAAAACTATGTTCAAGACCAGACCTAGGGTTCTTGTGGTAAGATAGACTAAAAACCCTCTTTAGCGTAATCAGGAACTACTCTgatcaataaaatacaaattaataattaaaaaaaagggtACCTACTATTTTAAGTGCATATGAAAACTGATCATAAAAGATGTTTTACATATACACGTTCCTAAGACCTTTTTTTGGAAATTagtattaataactaaataaaacaataaCCGTGTAAAGTCAGAGCAGACCTGTATGCCCTTTAAAACAGTATCTTAGTTACTGTATAcatcaaaaataaatacaactttCAATCTTCTTCGTAAGTTTGTAAACAAAATAGGTCTTCTGGTCATACAAGAACAAACTAATAAATTGAAGTACCTGAGTATTCCTGAAAAATAGTCACCTGATGCTTGTTAGGTAAACAACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299212 lncRNA downstream 13367 45200090 ~ 45200378 (-) True LOC118956634
TU299211 lncRNA downstream 13749 45199730 ~ 45199996 (-) False LOC118956634
TU299210 lncRNA downstream 14161 45199219 ~ 45199584 (-) True G263110
TU299206 lncRNA downstream 16399 45197003 ~ 45197346 (-) False LOC118956634
TU299126 lncRNA downstream 134908 45078521 ~ 45078837 (-) True G263039
TU299220 lncRNA upstream 7830 45222054 ~ 45222436 (-) True G263120
TU299219 lncRNA upstream 9848 45224072 ~ 45224612 (-) True G263119
TU299226 lncRNA upstream 28584 45242808 ~ 45243089 (-) True si:ch211-136m16.8
TU299227 lncRNA upstream 30526 45244750 ~ 45248820 (-) True G263127
TU299234 lncRNA upstream 41489 45255713 ~ 45260199 (-) True G263133
XM_036974223.1 mRNA downstream 1062 45210945 ~ 45212683 (-) True LOC110520013
XR_005046065.1 mRNA downstream 13083 45197077 ~ 45200662 (-) False LOC118956634
LOC110504133 mRNA downstream 23625 45179364 ~ 45190120 (-) True LOC110504133
XR_002472923.2 mRNA downstream 109459 45099333 ~ 45104286 (-) False LOC110520012
XM_021596962.2 mRNA downstream 227491 44964412 ~ 44986254 (-) True LOC110520009
LOC110520016 mRNA upstream 14026 45228250 ~ 45235027 (-) True LOC110520016
XM_021596974.2 mRNA upstream 22276 45236500 ~ 45243387 (-) False si:ch211-136m16.8
XM_021596977.2 mRNA upstream 88181 45302405 ~ 45327280 (-) False LOC110520019
XM_021596978.2 mRNA upstream 88181 45302405 ~ 45327280 (-) True LOC110520019
XM_021596981.2 mRNA upstream 186061 45400285 ~ 45425844 (-) False LOC110520020
TU299078 other downstream 109482 45099340 ~ 45104263 (-) True LOC110520012
TU299080 other downstream 201496 45010172 ~ 45012249 (-) True G262993
TU297567 other downstream 1182240 43989524 ~ 44031505 (-) True G261580
TU295461 other downstream 2886565 42305328 ~ 42327180 (-) False G259576
TU299385 other upstream 322108 45536332 ~ 45537542 (-) True G263274
TU302286 other upstream 2384994 47599218 ~ 47599815 (-) True G265988
TU302595 other upstream 2817823 48032047 ~ 48033302 (-) True LOC110505248
TU304852 other upstream 4281253 49495477 ~ 49495803 (-) True G268310
TU304858 other upstream 4288192 49502416 ~ 49502971 (-) True LOC118944672

Expression Profile