RNA id: TU299385



Basic Information


Item Value
RNA id TU299385
length 562
RNA type TUCP
GC content 0.52
exon number 2
gene id G263274
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 45536332 ~ 45537542 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCCGATTTTTCACCTggtcggctctgggattcgaaccagcaaccattcggttactggcccgaTGCTCTTAGCCGCTGTGCTACTTGCCGACCCATTTCAATGTCTTATGTCGACCTGCTACTGACCTGAGGTCCTCCTCGTCTCCCATCTCCACCCCGGCTTCCCGGAGCATGGCCACACCTTCCGAGTACTCCAGCCTCAGAGTGGGCTCCAGGAACTTGAATGGCTCGCTGGGGTACTGCTTCCCCACTGTCTGGATCTCTGTCTGGAAcctggcTTGTCTCGGAGTCCTTTAAAGATCTGAACCATGGTGTCGGTGATGGACTCGATCACTTCGTGGTAGTGGTAGTTGAACGCCAACTCAATATCCAGGCCCACAAACTCTGTCAGATGACGATGGGTGTTGGAGTCTTCTGCTCTGAACACTGGAACGGAGAACATCTTCAGTTAGTATCAGCGACGTCGTATTTCAGTGTGAAGATTAGATCCATCACCCCAGAGATAAACtagaggcaccctattccctttatagtgcactacatttgaccagggagtagggcac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU299406 lncRNA downstream 28764 45507246 ~ 45507568 (-) True G263293
TU299222 lncRNA downstream 239879 45294739 ~ 45296453 (-) True G263122
TU299234 lncRNA downstream 276133 45255713 ~ 45260199 (-) True G263133
TU299227 lncRNA downstream 287512 45244750 ~ 45248820 (-) True G263127
TU299226 lncRNA downstream 293243 45242808 ~ 45243089 (-) True si:ch211-136m16.8
TU299448 lncRNA upstream 53717 45591259 ~ 45591483 (-) True G263332
TU299489 lncRNA upstream 85445 45622987 ~ 45623447 (-) True G263373
TU299767 lncRNA upstream 296764 45834306 ~ 45834950 (-) True G263640
TU299771 lncRNA upstream 306541 45844083 ~ 45844346 (-) True G263644
TU300453 lncRNA upstream 346674 45884216 ~ 45884464 (-) True G264287
XM_036974233.1 mRNA downstream 73564 45434956 ~ 45462768 (-) False LOC110520023
XM_036974234.1 mRNA downstream 73564 45434956 ~ 45462768 (-) True LOC110520023
XM_036974232.1 mRNA downstream 73566 45434956 ~ 45462766 (-) False LOC110520023
XR_005046275.1 mRNA downstream 73566 45434956 ~ 45462766 (-) False LOC110520023
XM_021596979.2 mRNA downstream 103474 45400285 ~ 45432858 (-) False LOC110520020
XM_021596993.2 mRNA upstream 2302 45539844 ~ 45548118 (-) False LOC110520026
XM_021596991.2 mRNA upstream 2302 45539844 ~ 45548120 (-) False LOC110520026
XM_021596992.2 mRNA upstream 2302 45539844 ~ 45548737 (-) False LOC110520026
XM_036974236.1 mRNA upstream 2302 45539844 ~ 45567046 (-) True LOC110520026
XM_021596995.2 mRNA upstream 42561 45580103 ~ 45587403 (-) False si:ch1073-416j23.1
TU299078 other downstream 432069 45099340 ~ 45104263 (-) True LOC110520012
TU299080 other downstream 524083 45010172 ~ 45012249 (-) True G262993
TU297567 other downstream 1504827 43989524 ~ 44031505 (-) True G261580
TU295461 other downstream 3209152 42305328 ~ 42327180 (-) False G259576
TU295450 other downstream 3210554 42322739 ~ 42325778 (-) True G259576
TU302286 other upstream 2061676 47599218 ~ 47599815 (-) True G265988
TU302595 other upstream 2494505 48032047 ~ 48033302 (-) True LOC110505248
TU304852 other upstream 3957935 49495477 ~ 49495803 (-) True G268310
TU304858 other upstream 3964874 49502416 ~ 49502971 (-) True LOC118944672
TU304903 other upstream 4026306 49563848 ~ 49565989 (-) False LOC110520112

Expression Profile